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comparison normalize_dataset.xml @ 0:2ac4623ac41c draft

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planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/normalize_dataset commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
author bebatut
date Tue, 12 Apr 2016 03:08:08 -0400
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1 <tool id="normalize_dataset" name="Normalize a dataset by" version="0.1.0">
2 <description>row or column sum</description>
3
4 <requirements>
5 </requirements>
6
7 <stdio>
8 <exit_code range="1:" />
9 <exit_code range=":-1" />
10 </stdio>
11
12 <version_command></version_command>
13
14 <command><![CDATA[
15 python $__tool_directory__/normalize_dataset.py
16 --input_file $input_file
17 --output_file $output_file
18 --normalization $normalization
19 --format $format
20 ]]></command>
21
22 <inputs>
23 <param name="input_file" type="data" format="tabular,tsv,csv" label="Input file" help="File in tabular format with tab-separated columns and header in first line (--input_file)"/>
24
25 <param name="normalization" label="Normalization on" type="select" help="(--normalization)">
26 <option value="column" selected="True">Column</option>
27 <option value="row">Row</option>
28 </param>
29
30 <param name="format" label="Output format" type="select" help="(--format)">
31 <option value="proportion" selected="True">Proportion</option>
32 <option value="percentage">Percentage</option>
33 </param>
34 </inputs>
35
36 <outputs>
37 <data name="output_file" format="tabular"
38 label="${tool.name} on ${on_string}: Normalized dataset" />
39 </outputs>
40
41 <tests>
42 </tests>
43
44 <help><![CDATA[
45 **What it does**
46
47 This tool normalizes each row or column of a dataset by the row or column sum.
48
49 ]]></help>
50
51 <citations>
52 </citations>
53 </tool>