Mercurial > repos > bebatut > metaphlan2

diff tool_dependencies.xml @ 20:58e031637111 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 757604ca54eff007917e5f4c4735b1728988c321-dirty
author bebatut
date Fri, 06 Nov 2015 04:04:18 -0500
parents f92352296dd7
children 794951e4d986
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 05 10:54:40 2015 -0500
+++ b/tool_dependencies.xml	Fri Nov 06 04:04:18 2015 -0500
@@ -7,12 +7,13 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/default.zip</action>
+                <action type="make_directory">$INSTALL_DIR/metaphlan2</action>
                 <action type="move_directory_files">
                     <source_directory>.</source_directory>
-                    <destination_directory>$INSTALL_DIR</destination_directory>
+                    <destination_directory>$INSTALL_DIR/metaphlan2</destination_directory>
                 </action>
                 <action type="set_environment">
-                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/biobakery-metaphlan2-d1016b2f4e10/</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                 </action>
             </actions>