Mercurial > repos > bebatut > metaphlan2
diff metaphlan2krona.xml @ 28:1d993cca38e3 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit b467108d731001d89920aee31433a5b0a623c251-dirty
| author | bebatut |
|---|---|
| date | Thu, 28 Apr 2016 07:04:50 -0400 |
| parents | fb2dc25a832d |
| children | 713a83023626 |
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--- a/metaphlan2krona.xml Tue Apr 12 03:07:32 2016 -0400 +++ b/metaphlan2krona.xml Thu Apr 28 07:04:50 2016 -0400 @@ -1,23 +1,13 @@ -<tool id="metaphlan2krona" name="Format MetaPhlAn2" version="0.1.0"> +<tool id="metaphlan2krona" name="Format MetaPhlAn2" version="2.5.0"> <description>output for Krona</description> - <requirements> - <requirement type="package" version="2.2.5">bowtie2</requirement> - <requirement type="package" version="2.2.0">metaphlan2</requirement> - </requirements> + <macros> + <import>metaphlan2_macros.xml</import> + </macros> - <stdio> - <exit_code range="1:" level="fatal" description="" /> - <regex match="ERROR" - source="stderr" - level="fatal" - description="" /> - <regex match="WARNING" - source="stderr" - level="warning" - description="" /> - </stdio> + <expand macro="requirements"/> + <expand macro="stdio"/> <version_command> <![CDATA[ @@ -34,13 +24,11 @@ </command> <inputs> - <param name="input_file" type="data" format="tabular,txt" label="Input - file (MetaPhlAN2 output)" help="(--profile)"/> + <param name="input_file" type="data" format="tabular,txt" label="Input file (MetaPhlAN2 output)" help="(--profile)"/> </inputs> <outputs> - <data format="tabular" name="krona" - label="${tool.name} on ${on_string}: Krona file" /> + <data format="tabular" name="krona" label="${tool.name} on ${on_string}: Krona file" /> </outputs> <tests>