Mercurial > repos > bebatut > metaphlan2

comparison metaphlan2krona.xml @ 27:fb2dc25a832d draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
author bebatut
date Tue, 12 Apr 2016 03:07:32 -0400
parents 3f52f2d65d41
children 1d993cca38e3
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26:3f52f2d65d41 27:fb2dc25a832d
19 description="" /> 19 description="" />
20 </stdio> 20 </stdio>
21 21
22 <version_command> 22 <version_command>
23 <![CDATA[ 23 <![CDATA[
24 python \${METAPHLAN2_DIR}/utils/metaphlan2krona.py -v 24 metaphlan2krona.py -v
25 ]]> 25 ]]>
26 </version_command> 26 </version_command>
27 27
28 <command> 28 <command>
29 <![CDATA[ 29 <![CDATA[
30 python \${METAPHLAN2_DIR}/utils/metaphlan2krona.py 30 metaphlan2krona.py
31 -p $input_file 31 -p $input_file
32 -k $krona 32 -k $krona
33 ]]> 33 ]]>
34 </command> 34 </command>
35 35
41 <outputs> 41 <outputs>
42 <data format="tabular" name="krona" 42 <data format="tabular" name="krona"
43 label="${tool.name} on ${on_string}: Krona file" /> 43 label="${tool.name} on ${on_string}: Krona file" />
44 </outputs> 44 </outputs>
45 45
46 <tests> 46 <tests>
47 <test>
48 <param name="input_file" value="metaphlan2_profiled_metagenome.txt"/>
49 <output name="krona" file="metaphlan2krona_output_file.txt"/>
50 </test>
47 </tests> 51 </tests>
48 52
49 <help><![CDATA[ 53 <help><![CDATA[
50 54
51 **What it does** 55 **What it does**