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comparison metaphlan2.xml @ 37:e7ed163633e1 draft

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Uploaded
author bebatut
date Thu, 23 Feb 2017 08:13:41 -0500
parents 969ae2fd4c84
children 4d1bf99ad5ef
comparison
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36:969ae2fd4c84 37:e7ed163633e1
74 --biom '$biom_output_file' 74 --biom '$biom_output_file'
75 ]]> 75 ]]>
76 </command> 76 </command>
77 77
78 <inputs> 78 <inputs>
79 <param name="input_file" type="data" format="fastq,fasta,sam" label="Input file" help=""/> 79 <param name="input_file" type="data" format="fastq,fasta,sam" label="Input file"/>
80 <conditional name="db"> 80 <conditional name="db">
81 <param name="db_selector" type="select" label="Database with clade-specific marker genes" help=""> 81 <param name="db_selector" type="select" label="Database with clade-specific marker genes">
82 <option value="cached" selected="true">Locally cached</option> 82 <option value="cached" selected="true">Locally cached</option>
83 <option value="history">From history</option> 83 <option value="history">From history</option>
84 </param> 84 </param>
85 <when value="cached"> 85 <when value="cached">
86 <param name="cached_db" label="Cached database with clade-specific marker genes" type="select" > 86 <param name="cached_db" label="Cached database with clade-specific marker genes" type="select">
87 <options from_data_table="metaphlan2_database" /> 87 <options from_data_table="metaphlan2_database"/>
88 </param> 88 </param>
89 </when> 89 </when>
90 <when value="history"> 90 <when value="history">
91 <param argument="--bowtie2db" type="data" format="fasta" label="Database with clade-specific marker genes from history"/> 91 <param argument="--bowtie2db" type="data" format="fasta" label="Database with clade-specific marker genes from history"/>
92 <param argument="--mpa_pkl" type="data" format="json" label="Metadata associate to the database with clade-specific marker genes from history"/> 92 <param argument="--mpa_pkl" type="data" format="json" label="Metadata associate to the database with clade-specific marker genes from history"/>