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comparison metaphlan2.xml @ 23:62f9857766e6 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit eb7c3b4b1b4f2b11d105c091ce20df6d89fd6790
author bebatut
date Tue, 08 Dec 2015 09:05:02 -0500
parents 9ab0e6e9d1fb
children e8e0f835b4b6
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22:9ab0e6e9d1fb 23:62f9857766e6
19 description="" /> 19 description="" />
20 </stdio> 20 </stdio>
21 21
22 <version_command> 22 <version_command>
23 <![CDATA[ 23 <![CDATA[
24 python \${METAPHLAN2_DIR}/metaphlan.py -v 24 python \${METAPHLAN2_DIR}/metaphlan2.py -v
25 ]]> 25 ]]>
26 </version_command> 26 </version_command>
27 27
28 <command> 28 <command>
29 <![CDATA[ 29 <![CDATA[
88 <option value="f">Families only</option> 88 <option value="f">Families only</option>
89 <option value="g">Genera only</option> 89 <option value="g">Genera only</option>
90 <option value="s">Species only</option> 90 <option value="s">Species only</option>
91 </param> 91 </param>
92 </when> 92 </when>
93 <when value="rel_ab_w_read_stats"/>
94 <when value="reads_map"/>
95 <when value="clade_profiles"/>
93 <when value="marker_ab_table"> 96 <when value="marker_ab_table">
94 <param name="nreads" type="integer" value="0" label="Total number of reads in the original metagenome" help="It is used for normalizing the length-normalized counts with the metagenome size as well. No normalization applied if the value is not specified"/> 97 <param name="nreads" type="integer" value="0" label="Total number of reads in the original metagenome" help="It is used for normalizing the length-normalized counts with the metagenome size as well. No normalization applied if the value is not specified"/>
95 </when> 98 </when>
96 <when value="marker_pres_table"> 99 <when value="marker_pres_table">
97 <param name="pres_th" type="integer" value="0" label=" Threshold for calling a marker present" help=""/> 100 <param name="pres_th" type="integer" value="0" label=" Threshold for calling a marker present" help=""/>