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comparison metaphlan2.xml @ 14:54f2ad0c6960 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 8afeda0bbec5217302cc98c242bd32c0a356a5cb-dirty
author bebatut
date Thu, 05 Nov 2015 10:08:51 -0500
parents ac6ba16bda17
children 42fb257a4490
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13:f92352296dd7 14:54f2ad0c6960
1 <tool id="metaphlan2" name="MetaPhlAn2" version="0.1.0"> 1 <tool id="metaphlan2" name="MetaPhlAn2" version="0.1.0">
2 2
3 <description>to profile the composition of microbial communities</description> 3 <description>to profile the composition of microbial communities</description>
4 4
5 <requirements> 5 <requirements>
6 <requirement type="package" version="2.2.5">bowtie2</requirement> 6 <requirement type="package" version="2.2.4">bowtie2</requirement>
7 <requirement type="package" version="2.0">metaphlan2</requirement> 7 <requirement type="package" version="2.0">metaphlan2</requirement>
8 </requirements> 8 </requirements>
9 9
10 <stdio> 10 <stdio>
11 <exit_code range="1:" /> 11 <exit_code range="1:" level="fatal" description="" />
12 <regex match="ERROR"
13 source="stderr"
14 level="fatal"
15 description="" />
16 <regex match="WARNING"
17 source="stderr"
18 level="warning"
19 description="" />
12 </stdio> 20 </stdio>
13 21
14 <version_command> 22 <version_command>
15 <![CDATA[ 23 <![CDATA[
16 python \${METAPHLAN2_DIR}/metaphlan.py -v 24 python \${METAPHLAN2_DIR}/metaphlan.py -v