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comparison metaphlan2.xml @ 15:42fb257a4490 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit bf4b8a62e4414d68a917f5b72f3aedf34facaff2-dirty
author bebatut
date Thu, 05 Nov 2015 10:16:59 -0500
parents 54f2ad0c6960
children 84dd21255542
comparison
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14:54f2ad0c6960 15:42fb257a4490
35 --mpa_pkl \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200.pkl 35 --mpa_pkl \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200.pkl
36 --bowtie2db \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200 36 --bowtie2db \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200
37 37
38 $bowtie2_output 38 $bowtie2_output
39 #if $bowtie2_output == '' 39 #if $bowtie2_output == ''
40 --bowtie2out $bowtie2_output 40 --bowtie2out $bowtie2_output_file
41 #end if 41 #end if
42 42
43 -t $analysis_type.analysis_type_select 43 -t $analysis_type.analysis_type_select
44 #if $analysis_type.analysis_type_select == "rel_ab" 44 #if $analysis_type.analysis_type_select == "rel_ab"
45 --tax_lev $analysis_type.taxonomic_level 45 --tax_lev $analysis_type.taxonomic_level