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comparison metaphlan2.xml @ 8:2d1a20517280 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/sortmerna/ commit 259ec654231c792a102f99ab7bfd63cbabd4874a-dirty
author bebatut
date Wed, 28 Oct 2015 12:41:43 -0400
parents 4e4002bfc9b3
children 31dd7ace2be4
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7:4e4002bfc9b3 8:2d1a20517280
21 <![CDATA[ 21 <![CDATA[
22 python \${METAPHLAN2_DIR}/metaphlan.py 22 python \${METAPHLAN2_DIR}/metaphlan.py
23 $input_file 23 $input_file
24 -o $output_file 24 -o $output_file
25 25
26 --input_type ${input_reads.datatype.file_ext} 26 --input_type ${input_file.datatype.file_ext}
27 --mpa_pkl \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200.pkl 27 --mpa_pkl \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200.pkl
28 --bowtie2db \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200 28 --bowtie2db \${METAPHLAN2_DIR}/db_v20/mpa_v20_m200
29 29
30 $bowtie2_output 30 $bowtie2_output
31 #if $bowtie2_output == '' 31 #if $bowtie2_output == ''