Mercurial > repos > bebatut > metaphlan2

annotate tool-data/metaphlan2_metadata.loc.sample @ 28:1d993cca38e3 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit b467108d731001d89920aee31433a5b0a623c251-dirty
author bebatut
date Thu, 28 Apr 2016 07:04:50 -0400
parents fb2dc25a832d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
parents:
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1 #Metadata have to be downloaded from https://bitbucket.org/biobakery/metaphlan2/raw/5424bb911dfcdb7212ea0949d4faeb6e69cfa61f/db_v20/mpa_v20_m200.pkl
fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
parents:
diff changeset
2 #
fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
parents:
diff changeset
3 #Since MetaPhlAn comes bundled with 1 metadata database, you can use it
fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
parents:
diff changeset
4 #by downloading it as explained above and uncommenting the following lines.
fb2dc25a832d planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 5c45ed58045ce1686aa069403f8a9426ea20bac5-dirty
bebatut
parents:
diff changeset
5 #metadata_db_v20 Defaut MetaPhlAn2 metadata $METAPHLAN2_DIR/db_v20/mpa_v20_m200.pkl