# HG changeset patch
# User bebatut
# Date 1488472049 18000
# Node ID 7db566a6674c89b1f0d926bf2e62f97277d1c480
# Parent  367c5fc90bc597ac76b5c97caffdcc8e6b98e145
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit b'cf8373aeed58964f1d139a23cd1ec4698683c60e\n'-dirty

diff -r 367c5fc90bc5 -r 7db566a6674c metaphlan2_macros.xml
--- a/metaphlan2_macros.xml	Wed Mar 01 11:07:23 2017 -0500
+++ b/metaphlan2_macros.xml	Thu Mar 02 11:27:29 2017 -0500
@@ -25,4 +25,16 @@
           <citation type="doi">10.1038/nmeth.3589</citation>
       </citations>
     </xml>
+    <xml name="tax_lev">
+      <param argument="--tax_lev" type="select" label="Taxonomic level for the relative abundance output">
+        <option value="a" selected="true">All taxonomic levels</option>
+        <option value="k">Kingdoms (Bacteria and Archaea) only</option>
+        <option value="p">Phyla only</option>
+        <option value="c">Classes only</option>
+        <option value="o">Orders only</option>
+        <option value="f">Families only</option>
+        <option value="g">Genera only</option>
+        <option value="s">Species only</option>
+      </param>
+    </xml>
 </macros>
diff -r 367c5fc90bc5 -r 7db566a6674c repository_dependencies.xml
--- a/repository_dependencies.xml	Wed Mar 01 11:07:23 2017 -0500
+++ b/repository_dependencies.xml	Thu Mar 02 11:27:29 2017 -0500
@@ -1,4 +1,4 @@
 <?xml version="1.0"?>
 <repositories description="This requires the MetaPhlAn2 data manager definition to install all required databases.">
-    <repository changeset_revision="8602983cb86f" name="data_manager_metaphlan2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="bf858d6f7365" name="data_manager_metaphlan2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
 </repositories>