--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/humann2_split_table.xml	Mon Feb 20 11:33:12 2017 -0500
@@ -0,0 +1,68 @@
+<tool id="humann2_split_table" name="Split" version="@WRAPPER_VERSION@.0">
+    <description> a HUMAnN2 generated table</description>
+
+    <macros>
+        <import>humann2_macros.xml</import>
+    </macros>
+
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
+
+    <version_command>
+<![CDATA[
+    humann2_split_table --version
+]]>
+    </version_command>
+
+    <command><![CDATA[
+        humann2_split_table
+            --input '$input'
+            -o 'output'
+            #if $taxonomy_index
+                --taxonomy_index '$taxonomy_index'
+            #end if
+            #if $taxonomy_level
+                --taxonomy_level '$taxonomy_level'
+            #end if
+    ]]></command>
+
+    <inputs>
+        <param argument="--input" type="data" format="tsv,biom" label="Gene table to split"/>
+        <param argument="--taxonomy_index" type="text" label="Index of the gene in the taxonomy data" optional="true"/>
+        <param argument="--taxonomy_level" type="select" label="Level of taxonomy for the output" optional="true" help="if input is from picrust metagenome_contributions.py">
+            <option value="Kingdom">Kingdom</option>
+            <option value="Phylum">Phylum</option>
+            <option value="Class">Class</option>
+            <option value="Order">Order</option>
+            <option value="Family">Family</option>
+            <option value="Genus">Genus</option>
+            <option value="Species">Species</option>
+        </param>
+    </inputs>
+
+    <outputs>
+        <collection type="list" name="split_tables" label="${tool.name} on ${on_string}: Split tables">
+            <discover_datasets pattern="__designation_and_ext__" directory="output"/>
+        </collection>
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input" value="joined_pathway_coverage_abundance.tsv"/>
+            <output_collection name="split_tables" type="list" >
+                <element name="demo_Coverage" file="demo_Coverage.tsv" />
+                <element name="demo_Abundance" file="demo_Abundance.tsv" />
+            </output_collection>
+        </test>
+    </tests>
+
+    <help><![CDATA[
+**What it does**
+
+HUMAnN is a pipeline for efficiently and accuretly profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data. `Read more about the tool <http://huttenhower.sph.harvard.edu/humann2/manual>`_.
+
+Split HUMAnN2 table is a tool to split a gene table with multiple columns. This file can have been generated with the join table tool.
+    ]]></help>
+
+    <expand macro="citations"/>
+</tool>