# HG changeset patch # User bebatut # Date 1488542965 18000 # Node ID d3cd46f1ebca597fb9d1472ebc33c1b6d9bb9aa0 # Parent ffba4cba95c785db40c558bfffdedc868d034e84 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty diff -r ffba4cba95c7 -r d3cd46f1ebca README.rst --- a/README.rst Fri Mar 03 06:27:03 2017 -0500 +++ b/README.rst Fri Mar 03 07:09:25 2017 -0500 @@ -4,11 +4,9 @@ Galaxy should be able to automatically install the dependencies, i.e. the HUMAnN2 binaries and its dependencies. -After installation, you must tell Galaxy about the defaut database with -clade-specific marker genes used for taxonomic profiling (MetaPhlAn2), and where -to find it: +After installation, you must tell Galaxy about the defaut databases for MetaPhlAn2 and HUMAnN2. +You need to use the data managers for that and installing: -* Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line -* Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip -* Unzip it -* Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder +- MetaPhlAn2 database +- HUMAnN2 nucleotide database +- HUMAnN2 protein database \ No newline at end of file