Mercurial > repos > bebatut > humann2_rename_table

diff test-data/cpm_community_renormalized_pathway_abundance.tsv @ 0:993b75cba608 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f126d56aa160b10437d9dabf5c9e32fd4569fee6\n'-dirty
author bebatut
date Mon, 20 Feb 2017 11:29:37 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cpm_community_renormalized_pathway_abundance.tsv	Mon Feb 20 11:29:37 2017 -0500
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+# Pathway	demo_Abundance
+PWY-5423: oleoresin monoterpene volatiles biosynthesis	180020
+PWY-5423: oleoresin monoterpene volatiles biosynthesis|unclassified	180020
+PWY-6305: putrescine biosynthesis IV	161410
+PWY-6305: putrescine biosynthesis IV|unclassified	161410
+PWY490-3: nitrate reduction VI (assimilatory)	143637
+PWY490-3: nitrate reduction VI (assimilatory)|unclassified	143637
+PWY-1269: CMP-3-deoxy-D-manno-octulosonate biosynthesis I	139077
+PWY-1269: CMP-3-deoxy-D-manno-octulosonate biosynthesis I|unclassified	117223
+COA-PWY-1: coenzyme A biosynthesis II (mammalian)	83200
+COA-PWY-1: coenzyme A biosynthesis II (mammalian)|g__Bacteroides.s__Bacteroides_vulgatus	62649.4
+PWY-6700: queuosine biosynthesis	72792.1
+PWY-6700: queuosine biosynthesis|g__Bacteroides.s__Bacteroides_dorei	44461.5
+PWY-6700: queuosine biosynthesis|g__Bacteroides.s__Bacteroides_vulgatus	18957.3
+PWY-7111: pyruvate fermentation to isobutanol (engineered)	41366.2
+PWY-7111: pyruvate fermentation to isobutanol (engineered)|g__Bacteroides.s__Bacteroides_vulgatus	30998.5
+VALSYN-PWY: L-valine biosynthesis	41366.2
+VALSYN-PWY: L-valine biosynthesis|g__Bacteroides.s__Bacteroides_vulgatus	30998.5
+PWY-5695: urate biosynthesis/inosine 5'-phosphate degradation	37515.4
+PWY-5097: L-lysine biosynthesis VI	34829.8
+PWY-2942: L-lysine biosynthesis III	33055.4
+PWY-2942: L-lysine biosynthesis III|g__Bacteroides.s__Bacteroides_dorei	23325.7
+PWY-7219: adenosine ribonucleotides de novo biosynthesis	31729.7
+PWY-7219: adenosine ribonucleotides de novo biosynthesis|g__Bacteroides.s__Bacteroides_dorei	16294.6