Mercurial > repos > bebatut > humann2_join_tables
comparison README.rst @ 5:64596bf07ce1 draft default tip
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
| author | bebatut |
|---|---|
| date | Fri, 03 Mar 2017 06:54:39 -0500 |
| parents | e3c88925060e |
| children |
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| 4:1b53dcca7490 | 5:64596bf07ce1 |
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| 2 =========================== | 2 =========================== |
| 3 | 3 |
| 4 Galaxy should be able to automatically install the dependencies, i.e. the | 4 Galaxy should be able to automatically install the dependencies, i.e. the |
| 5 HUMAnN2 binaries and its dependencies. | 5 HUMAnN2 binaries and its dependencies. |
| 6 | 6 |
| 7 After installation, you must tell Galaxy about the defaut database with | 7 After installation, you must tell Galaxy about the defaut databases for MetaPhlAn2 and HUMAnN2. |
| 8 clade-specific marker genes used for taxonomic profiling (MetaPhlAn2), and where | 8 You need to use the data managers for that and installing: |
| 9 to find it: | |
| 10 | 9 |
| 11 * Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line | 10 - MetaPhlAn2 database |
| 12 * Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip | 11 - HUMAnN2 nucleotide database |
| 13 * Unzip it | 12 - HUMAnN2 protein database |
| 14 * Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder |