Mercurial > repos > bebatut > humann2_join_tables
comparison README.rst @ 0:e3c88925060e draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f126d56aa160b10437d9dabf5c9e32fd4569fee6\n'-dirty
| author | bebatut |
|---|---|
| date | Mon, 20 Feb 2017 11:40:32 -0500 |
| parents | |
| children | 64596bf07ce1 |
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| -1:000000000000 | 0:e3c88925060e |
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| 1 Galaxy wrappers for HUMAnN2 | |
| 2 =========================== | |
| 3 | |
| 4 Galaxy should be able to automatically install the dependencies, i.e. the | |
| 5 HUMAnN2 binaries and its dependencies. | |
| 6 | |
| 7 After installation, you must tell Galaxy about the defaut database with | |
| 8 clade-specific marker genes used for taxonomic profiling (MetaPhlAn2), and where | |
| 9 to find it: | |
| 10 | |
| 11 * Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line | |
| 12 * Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip | |
| 13 * Unzip it | |
| 14 * Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder |