# HG changeset patch
# User bebatut
# Date 1488541248 18000
# Node ID 8b86d590b4428c67f817c865da88936f671fb752
# Parent  a8d89b78b6e2bf32788e4badc02fe4ce0075e420
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty

diff -r a8d89b78b6e2 -r 8b86d590b442 humann2.xml
--- a/humann2.xml	Fri Mar 03 06:36:50 2017 -0500
+++ b/humann2.xml	Fri Mar 03 06:40:48 2017 -0500
@@ -59,7 +59,7 @@
             $bypass_nucleotide_search
             --annotation-gene-index $annotation_gene_index
 
-            #set $metaphlan_option = "-t rel_ab"
+            #set $metaphlan_option = '-t rel_ab'
             #if $taxo_profile.taxonomic_profile_test == "true":
                 --taxonomic-profile '$taxo_profile.taxonomic_profile'
             #else
@@ -73,7 +73,7 @@
                     #set $metaphlan_option += ' --mpa_pkl ' + $path/$value + '.pkl'
                 #end if
             #end if
-            --metaphlan-options="$metaphlan_option"
+            --metaphlan-options='$metaphlan_option'
 
             #if $nucleotide_db.nucleotide_db_selector == "cached"
                 --nucleotide-database '$nucleotide_db.nucleotide_database.fields.path'