Mercurial > repos > bebatut > humann2

diff tool_dependencies.xml @ 0:947012405a6e draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
author bebatut
date Thu, 17 Dec 2015 08:58:05 -0500
parents
children 04128aff56e0
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Dec 17 08:58:05 2015 -0500
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bowtie2" version="2.2.5">
+        <repository changeset_revision="f5582ac5ba3c" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="metaphlan2" version="2.0">
+        <repository changeset_revision="d041345c1c7b" name="package_metaphlan_2_0" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="diamond" version="0.7.10">
+        <repository changeset_revision="f3f009bdca19" name="package_diamond_0_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="humann2" version="2.0">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="77291569ec1a90287d7eedef131bda583ce7ffd9bc3208d52d5c7407a1890e06" type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action>
+                <action type="shell_command">python setup.py install --bypass-dependencies-install</action>
+                <action type="make_directory">$INSTALL_DIR/databases</action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="HUMANN2_DIR">$INSTALL_DIR/</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme />
+    </package>
+</tool_dependency>