Mercurial > repos > bebatut > humann2

diff humann2_join_tables.xml @ 9:7d2be77d5b83 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 11b919f18ba85a40ff0ff4df82aac9be6da188c5-dirty
author bebatut
date Thu, 31 Mar 2016 03:35:17 -0400
parents 0d3d44f13122
children e504cd2410a6
line wrap: on
line diff
--- a/humann2_join_tables.xml	Mon Feb 22 07:09:45 2016 -0500
+++ b/humann2_join_tables.xml	Thu Mar 31 03:35:17 2016 -0400
@@ -1,20 +1,16 @@
-<tool id="humann2_join_tables" name="Join HUMAnN2 table" version="0.1.0">
+<tool id="humann2_join_tables" name="Join HUMAnN2 table" version="0.5.0">
     <description></description>
 
-    <requirements>
-        <requirement type="package" version="2.2.4">bowtie2</requirement>
-        <requirement type="package" version="2.0">metaphlan2</requirement>
-        <requirement type="package" version="0.6.13">diamond</requirement>
-        <requirement type="package" version="2.0">humann2</requirement>
-    </requirements>
+    <macros>
+        <import>humann2_macros.xml</import>
+    </macros>
 
-    <stdio>
-        <exit_code range="1:" />
-    </stdio>
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
 
     <version_command>
 <![CDATA[
-    \${HUMANN2_DIR}/humann2_join_tables --version
+    humann2_join_tables --version
 ]]>
     </version_command>
 
@@ -27,7 +23,7 @@
         #end for
 
         && 
-        \${HUMANN2_DIR}/humann2_join_tables
+        humann2_join_tables
             -i "tmp_dir"
             -o $joined_table           
     ]]></command>