Mercurial > repos > bebatut > humann2

diff humann2.xml @ 5:2bf5fcf30e1f draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit e5b8f29dde45dddcda6ee283212dd1bdde487f87-dirty
author bebatut
date Fri, 18 Dec 2015 08:34:43 -0500
parents c05e34aa939b
children 0d3d44f13122
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--- a/humann2.xml	Fri Dec 18 05:05:04 2015 -0500
+++ b/humann2.xml	Fri Dec 18 08:34:43 2015 -0500
@@ -4,7 +4,7 @@
     <requirements>
         <requirement type="package" version="2.2.5">bowtie2</requirement>
         <requirement type="package" version="2.0">metaphlan2</requirement>
-        <requirement type="package" version="0.6.13">diamond</requirement>
+        <requirement type="package" version="0.7.10">diamond</requirement>
         <requirement type="package" version="2.0">humann2</requirement>
     </requirements>
 
@@ -47,7 +47,7 @@
             --metaphlan \${METAPHLAN2_DIR}/
             --metaphlan-options "-t rel_ab"
             --bowtie2 \${PATH}
-            --diamond `which diamond`
+            --diamond \${PATH}
 
             --threads \${GALAXY_SLOTS:-4}