Mercurial > repos > bebatut > humann2

diff tool_dependencies.xml @ 8:0d3d44f13122 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 313952cc4a20e8fb82380bfbf5ede26217197719
author bebatut
date Mon, 22 Feb 2016 07:09:45 -0500
parents d084f63fbf30
children 7d2be77d5b83
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--- a/tool_dependencies.xml	Fri Dec 18 09:04:07 2015 -0500
+++ b/tool_dependencies.xml	Mon Feb 22 07:09:45 2016 -0500
@@ -10,17 +10,6 @@
         <repository changeset_revision="f3f009bdca19" name="package_diamond_0_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="humann2" version="2.0">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://bitbucket.org/biobakery/humann2/downloads/humann2_v0.5.0.tar.gz</action>
-                <action type="shell_command">python setup.py install --bypass-dependencies-install</action>
-                <action type="make_directory">$INSTALL_DIR/databases</action>
-                <action type="set_environment">
-                    <environment_variable action="set_to" name="HUMANN2_DIR">$INSTALL_DIR/</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme />
+        <repository changeset_revision="abe443d7f9e7" name="package_humann_2_0" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>