Mercurial > repos > bebatut > humann2

diff humann2.xml @ 8:0d3d44f13122 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 313952cc4a20e8fb82380bfbf5ede26217197719
author bebatut
date Mon, 22 Feb 2016 07:09:45 -0500
parents 2bf5fcf30e1f
children 7d2be77d5b83
line wrap: on
line diff
--- a/humann2.xml	Fri Dec 18 09:04:07 2015 -0500
+++ b/humann2.xml	Mon Feb 22 07:09:45 2016 -0500
@@ -14,16 +14,12 @@
 
     <version_command>
 <![CDATA[
-    humann2 --version
+    \${HUMANN2_DIR}/humann2 --version
 ]]>
     </version_command>
 
     <command><![CDATA[
-        (which diamond || exit 200)
-
-        && 
-
-        humann2 
+        \${HUMANN2_DIR}/humann2 
             -i "$input_file"
         
             #if $taxonomic_profile.taxonomic_profile_test: