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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 79571d981d7d56657699be8aa24a40a36a8d0ab5-dirty
author bebatut
date Thu, 02 Jun 2016 04:21:54 -0400
parents 7838137cbc7f
children 56e8ce2f3c96
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12:7838137cbc7f 13:b0cd2569ccfb
1 Galaxy wrappers for HUMAnN2 1 Galaxy wrappers for HUMAnN2
2 =========================== 2 ===========================
3 3
4 Galaxy should be able to automatically install the dependencies, i.e. the 4 Galaxy should be able to automatically install the dependencies, i.e. the
5 MetaPhlAn2 binaries. 5 HUMAnN2 binaries and its dependencies.
6 6
7 After installation, you must tell Galaxy about the defaut database with 7 After installation, you must tell Galaxy about the defaut database with
8 clade-specific marker genes, and where to find it: 8 clade-specific marker genes used for taxonomic profiling (MetaPhlAn2), and where
9 to find it:
9 10
10 * Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line 11 * Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line
11 * Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip 12 * Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip
12 * Unzip it 13 * Unzip it
13 * Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder 14 * Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder