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comparison test-data/humann2_sam_pathcoverage.tsv @ 0:947012405a6e draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
author bebatut
date Thu, 17 Dec 2015 08:58:05 -0500
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-1:000000000000 0:947012405a6e
1 # Pathway humann2_Coverage
2 PWY-7208: superpathway of pyrimidine nucleobases salvage 0.8326116675
3 PWY-7208: superpathway of pyrimidine nucleobases salvage|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.7887151367
4 PWY-3841: folate transformations II 0.7981953577
5 PWY-7221: guanosine ribonucleotides de novo biosynthesis 0.7732485560
6 PWY-7221: guanosine ribonucleotides de novo biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5731619001
7 1CMET2-PWY: N10-formyl-tetrahydrofolate biosynthesis 0.7495073164
8 PWY-5100: pyruvate fermentation to acetate and lactate II 0.7410248669
9 PWY-5100: pyruvate fermentation to acetate and lactate II|g__Bacteroides.s__Bacteroides_stercoris 0.7881393909
10 PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I 0.6941671038
11 PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.6450407623
12 PWY-5505: L-glutamate and L-glutamine biosynthesis 0.6903428673
13 PWY-5505: L-glutamate and L-glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.7047445298
14 HSERMETANA-PWY: L-methionine biosynthesis III 0.6861852057
15 HSERMETANA-PWY: L-methionine biosynthesis III|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5522121285
16 HOMOSER-METSYN-PWY: L-methionine biosynthesis I 0.6441336419
17 HOMOSER-METSYN-PWY: L-methionine biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5982506088
18 DTDPRHAMSYN-PWY: dTDP-L-rhamnose biosynthesis I 0.6416934147
19 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I 0.6270534008
20 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5174177685
21 PWY66-422: D-galactose degradation V (Leloir pathway) 0.6162679643
22 PWY66-422: D-galactose degradation V (Leloir pathway)|g__Bacteroides.s__Bacteroides_stercoris 0.6850888598
23 PWY-6507: 4-deoxy-L-threo-hex-4-enopyranuronate degradation 0.6138469918
24 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I 0.6077002683
25 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4750575774
26 PWY-7242: D-fructuronate degradation 0.5964915791
27 PWY-5030: L-histidine degradation III 0.5883052819
28 VALSYN-PWY: L-valine biosynthesis 0.5688165005
29 VALSYN-PWY: L-valine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4748410191
30 GLUCUROCAT-PWY: superpathway of β-D-glucuronide and D-glucuronate degradation 0.5677917487
31 CALVIN-PWY: Calvin-Benson-Bassham cycle 0.5485251397
32 PWY-5659: GDP-mannose biosynthesis 0.5282770203
33 PWY-5659: GDP-mannose biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4801917076
34 RHAMCAT-PWY: L-rhamnose degradation I 0.5016200440
35 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis 0.5008438557
36 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5109686863
37 GALACTUROCAT-PWY: D-galacturonate degradation I 0.4965486979
38 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II 0.4941295971
39 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_stercoris 0.4619040484
40 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.3767488276
41 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II 0.4941295971
42 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_stercoris 0.4619040484
43 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.3767488276
44 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II 0.4768751535
45 PWY-3781: aerobic respiration I (cytochrome c) 0.4275710623