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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'cdcc4b879fb57e97a578a767f268a8dbaa961212\n'-dirty
author bebatut
date Fri, 03 Mar 2017 07:40:11 -0500
parents 56e8ce2f3c96
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7838137cbc7f planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
parents:
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1 Galaxy wrappers for HUMAnN2
7838137cbc7f planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
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2 ===========================
7838137cbc7f planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
parents:
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7838137cbc7f planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
parents:
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4 Galaxy should be able to automatically install the dependencies, i.e. the
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b0cd2569ccfb planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 79571d981d7d56657699be8aa24a40a36a8d0ab5-dirty
bebatut
parents: 12
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5 HUMAnN2 binaries and its dependencies.
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7838137cbc7f planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
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56e8ce2f3c96 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
bebatut
parents: 13
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7 After installation, you must tell Galaxy about the defaut databases for MetaPhlAn2 and HUMAnN2.
56e8ce2f3c96 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
bebatut
parents: 13
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8 You need to use the data managers for that and installing:
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7838137cbc7f planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
bebatut
parents:
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56e8ce2f3c96 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
bebatut
parents: 13
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10 - MetaPhlAn2 database
56e8ce2f3c96 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
bebatut
parents: 13
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11 - HUMAnN2 nucleotide database
56e8ce2f3c96 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
bebatut
parents: 13
diff changeset
12 - HUMAnN2 protein database