Mercurial > repos > bebatut > graphlan

annotate graphlan.xml @ 3:dbb2478c7ee4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
author bebatut
date Thu, 26 May 2016 09:37:26 -0400
parents 64e69b47b4ec
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
1 <tool id="graphlan" name="GraPhlAn" version="0.9.7">
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
2
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
3 <description>to produce graphical output of an input tree</description>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
4
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
5 <macros>
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
6 <import>graphlan_macros.xml</import>
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
7 </macros>
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
8
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
9 <expand macro="requirements"/>
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
10
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
11 <stdio>
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
12 <regex match="Warning"
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
13 source="stderr"
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
14 level="warning"
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
15 description="" />
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
16 </stdio>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
17
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
18 <version_command>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
19 <![CDATA[
1
5cdaa98d9376 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty
bebatut
parents: 0
diff changeset
20 graphlan.py -v
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
21 ]]>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
22 </version_command>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
23
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
24 <command>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
25 <![CDATA[
1
5cdaa98d9376 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty
bebatut
parents: 0
diff changeset
26 graphlan.py
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
27 --format $format
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
28
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
29 #if $dpi
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
30 --dpi $dpi
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
31 #end if
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
32
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
33 --size $size
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
34
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
35 #if $pad
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
36 --pad $pad
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
37 #end if
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
38
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
39 $input_tree
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
40
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
41 #if str($format) == "png"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
42 $png_output_image
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
43 #else if str($format) == "pdf"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
44 $pdf_output_image
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
45 #else if str($format) == "ps"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
46 $ps_output_image
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
47 #else if str($format) == "eps"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
48 $eps_output_image
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
49 #else
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
50 $svg_output_image
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
51 #end if
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
52 ]]>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
53 </command>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
54
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
55 <inputs>
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
56 <param name="input_tree" type="data" format="txt" label="Input tree" help="The tree must be in PhlyloXML, Newick or text format."/>
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
57
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
58 <param name='format' type="select" label="Output format" help="(--format)">
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
59 <option value="png" selected="true">PNG</option>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
60 <option value="pdf">PDF</option>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
61 <option value="ps">PS</option>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
62 <option value="eps">EPS</option>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
63 <option value="svg">SVG</option>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
64 </param>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
65
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
66 <param name="dpi" type="integer" label="Dpi of the output image
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
67 (Optional)" help="For non vectorial formats (--dpi)" optional="True"/>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
68
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
69 <param name="size" type="integer" value="7" label="Size of the output image
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
70 (in inches)" help="(--size)"/>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
71
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
72 <param name="pad" type="integer" label="Distance between the most external
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
73 graphical element and the border of the image (Optional)"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
74 help="(--pad)" optional="True"/>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
75 </inputs>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
76
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
77 <outputs>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
78 <data format="png" name="png_output_image"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
79 label="${tool.name} on ${on_string}: Image">
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
80 <filter>format=="png"</filter>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
81 </data>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
82 <data format="pdf" name="pdf_output_image"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
83 label="${tool.name} on ${on_string}: Image">
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
84 <filter>format=="pdf"</filter>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
85 </data>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
86 <data format="ps" name="ps_output_image"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
87 label="${tool.name} on ${on_string}: Image">
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
88 <filter>format=="ps"</filter>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
89 </data>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
90 <data format="eps" name="eps_output_image"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
91 label="${tool.name} on ${on_string}: Image">
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
92 <filter>format=="eps"</filter>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
93 </data>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
94 <data format="svg" name="svg_output_image"
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
95 label="${tool.name} on ${on_string}: Image">
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
96 <filter>format=="svg"</filter>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
97 </data>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
98 </outputs>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
99
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
100 <tests>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
101 <test>
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
102 <param name="input_tree" value="intermediary_tree.txt"/>
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
103 <param name="format" value="png"/>
1
5cdaa98d9376 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty
bebatut
parents: 0
diff changeset
104 <param name="dpi" value="100"/>
5cdaa98d9376 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty
bebatut
parents: 0
diff changeset
105 <param name="size" value="7"/>
5cdaa98d9376 planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty
bebatut
parents: 0
diff changeset
106 <param name="pad" value="2"/>
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
107 <output name="png_output_image" file="png_image.png" />
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
108 </test>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
109 </tests>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
110
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
111 <help><![CDATA[
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
112 **What it does**
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
113
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
114 GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.
0
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
115
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
116 For more information, check the `user manual <https://bitbucket.org/nsegata/graphlan/overview>`_.
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
117
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
118 ]]></help>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
119
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
120 <citations>
c5746c07ca5e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit c1077b92ffc7d750e04fd327f32caca7a9bb2a2a-dirty
bebatut
parents:
diff changeset
121 </citations>
2
64e69b47b4ec planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit fe1ede437f1b0e414d84d75e6a607047d1678444-dirty
bebatut
parents: 1
diff changeset
122 </tool>