Mercurial > repos > bebatut > format_metaphlan2_output

diff test-data/all_taxo_level_abundance.txt @ 0:aa68d226892e draft default tip

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/format_metaphlan2_output/ commit 36388cac89e4ffa55fe317d10cbf97346ab00a71-dirty
author bebatut
date Wed, 20 Apr 2016 07:52:22 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/all_taxo_level_abundance.txt	Wed Apr 20 07:52:22 2016 -0400
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+kingdom	phylum	class	order	family	genus	species	strains	abundance
+Bacteria								99.20573
+Archaea								0.79427
+Bacteria	Deinococcus Thermus							45.20297
+Bacteria	Firmicutes							19.15406
+Bacteria	Proteobacteria							16.57369
+Bacteria	Actinobacteria							10.37863
+Bacteria	Bacteroidetes							7.89639
+Archaea	Euryarchaeota							0.79427
+Bacteria	Deinococcus Thermus	Deinococci						45.20297
+Bacteria	Firmicutes	Bacilli						17.33469
+Bacteria	Actinobacteria	Actinobacteria						10.37863
+Bacteria	Proteobacteria	Gammaproteobacteria						8.28554
+Bacteria	Bacteroidetes	Bacteroidia						7.89639
+Bacteria	Proteobacteria	Epsilonproteobacteria						4.03024
+Bacteria	Proteobacteria	Betaproteobacteria						3.73739
+Bacteria	Firmicutes	Clostridia						1.81937
+Archaea	Euryarchaeota	Methanobacteria						0.79427
+Bacteria	Proteobacteria	Alphaproteobacteria						0.52051
+Bacteria	Deinococcus Thermus	Deinococci	Deinococcales					45.20297
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales					10.37863
+Bacteria	Firmicutes	Bacilli	Bacillales					9.19153
+Bacteria	Firmicutes	Bacilli	Lactobacillales					8.14315
+Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales					7.89639
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales					6.58945
+Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales					4.03024
+Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales					3.73739
+Bacteria	Firmicutes	Clostridia	Clostridiales					1.81937
+Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacteriales					1.6961
+Archaea	Euryarchaeota	Methanobacteria	Methanobacteriales					0.79427
+Bacteria	Proteobacteria	Alphaproteobacteria	Rhodobacterales					0.52051
+Bacteria	Deinococcus Thermus	Deinococci	Deinococcales	Deinococcaceae				45.20297
+Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidaceae				7.89639
+Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae				7.4516
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Propionibacteriaceae				6.71696
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae				6.43313
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae				5.88648
+Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae				4.03024
+Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae				3.73739
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae				3.66166
+Bacteria	Firmicutes	Clostridia	Clostridiales	Clostridiaceae				1.81937
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae				1.71002
+Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacteriales	Enterobacteriaceae				1.6961
+Bacteria	Firmicutes	Bacilli	Bacillales	Listeriaceae				1.58307
+Archaea	Euryarchaeota	Methanobacteria	Methanobacteriales	Methanobacteriaceae				0.79427
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae				0.70297
+Bacteria	Proteobacteria	Alphaproteobacteria	Rhodobacterales	Rhodobacteraceae				0.52051
+Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae				0.15687
+Bacteria	Deinococcus Thermus	Deinococci	Deinococcales	Deinococcaceae	Deinococcus			45.20297
+Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidaceae	Bacteroides			7.89639
+Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus			7.4516
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Propionibacteriaceae	Propionibacterium			6.71696
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus			6.43313
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter			5.88648
+Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter			4.03024
+Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria			3.73739
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces			3.66166
+Bacteria	Firmicutes	Clostridia	Clostridiales	Clostridiaceae	Clostridium			1.81937
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus			1.71002
+Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacteriales	Enterobacteriaceae	Escherichia			1.6961
+Bacteria	Firmicutes	Bacilli	Bacillales	Listeriaceae	Listeria			1.58307
+Archaea	Euryarchaeota	Methanobacteria	Methanobacteriales	Methanobacteriaceae	Methanobrevibacter			0.79427
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas			0.70297
+Bacteria	Proteobacteria	Alphaproteobacteria	Rhodobacterales	Rhodobacteraceae	Rhodobacter			0.52051
+Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Bacillus			0.15687
+Bacteria	Deinococcus Thermus	Deinococci	Deinococcales	Deinococcaceae	Deinococcus	Deinococcus radiodurans		45.20297
+Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidaceae	Bacteroides	Bacteroides vulgatus		7.89639
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Propionibacteriaceae	Propionibacterium	Propionibacterium acnes		6.71696
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	Acinetobacter baumannii		5.88648
+Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	Staphylococcus epidermidis		4.54517
+Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori		4.03024
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	Streptococcus mitis oralis pneumoniae		4.02995
+Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	Neisseria meningitidis		3.73739
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	Actinomyces odontolyticus		3.66166
+Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	Staphylococcus aureus		2.90642
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	Streptococcus mutans		2.35195
+Bacteria	Firmicutes	Clostridia	Clostridiales	Clostridiaceae	Clostridium	Clostridium beijerinckii		1.81937
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus	Enterococcus faecalis		1.71002
+Bacteria	Firmicutes	Bacilli	Bacillales	Listeriaceae	Listeria	Listeria monocytogenes		1.58307
+Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacteriales	Enterobacteriaceae	Escherichia	Escherichia coli		0.89751
+Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacteriales	Enterobacteriaceae	Escherichia	Escherichia unclassified		0.79859
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	Pseudomonas unclassified		0.55542
+Archaea	Euryarchaeota	Methanobacteria	Methanobacteriales	Methanobacteriaceae	Methanobrevibacter	Methanobrevibacter smithii		0.55066
+Bacteria	Proteobacteria	Alphaproteobacteria	Rhodobacterales	Rhodobacteraceae	Rhodobacter	Rhodobacter sphaeroides		0.52051
+Archaea	Euryarchaeota	Methanobacteria	Methanobacteriales	Methanobacteriaceae	Methanobrevibacter	Methanobrevibacter unclassified		0.24361
+Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Bacillus	Bacillus cereus thuringiensis		0.15687
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	Pseudomonas aeruginosa		0.14755
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	Streptococcus agalactiae		0.05124
+Bacteria	Deinococcus Thermus	Deinococci	Deinococcales	Deinococcaceae	Deinococcus	Deinococcus radiodurans	GCF 000008565	45.20297
+Bacteria	Bacteroidetes	Bacteroidia	Bacteroidales	Bacteroidaceae	Bacteroides	Bacteroides vulgatus	GCF 000012825	7.89639
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Propionibacteriaceae	Propionibacterium	Propionibacterium acnes	Propionibacterium acnes unclassified	6.71696
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Moraxellaceae	Acinetobacter	Acinetobacter baumannii	Acinetobacter baumannii unclassified	5.88648
+Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	Staphylococcus epidermidis	Staphylococcus epidermidis unclassified	4.54517
+Bacteria	Proteobacteria	Epsilonproteobacteria	Campylobacterales	Helicobacteraceae	Helicobacter	Helicobacter pylori	Helicobacter pylori unclassified	4.03024
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	Streptococcus mitis oralis pneumoniae	Streptococcus mitis oralis pneumoniae unclassified	4.02995
+Bacteria	Proteobacteria	Betaproteobacteria	Neisseriales	Neisseriaceae	Neisseria	Neisseria meningitidis	Neisseria meningitidis unclassified	3.73739
+Bacteria	Actinobacteria	Actinobacteria	Actinomycetales	Actinomycetaceae	Actinomyces	Actinomyces odontolyticus	Actinomyces odontolyticus unclassified	3.66166
+Bacteria	Firmicutes	Bacilli	Bacillales	Staphylococcaceae	Staphylococcus	Staphylococcus aureus	Staphylococcus aureus unclassified	2.90642
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	Streptococcus mutans	Streptococcus mutans unclassified	2.35195
+Bacteria	Firmicutes	Clostridia	Clostridiales	Clostridiaceae	Clostridium	Clostridium beijerinckii	Clostridium beijerinckii unclassified	1.81937
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Enterococcaceae	Enterococcus	Enterococcus faecalis	Enterococcus faecalis unclassified	1.71002
+Bacteria	Firmicutes	Bacilli	Bacillales	Listeriaceae	Listeria	Listeria monocytogenes	Listeria monocytogenes unclassified	1.58307
+Bacteria	Proteobacteria	Gammaproteobacteria	Enterobacteriales	Enterobacteriaceae	Escherichia	Escherichia coli	Escherichia coli unclassified	0.89751
+Archaea	Euryarchaeota	Methanobacteria	Methanobacteriales	Methanobacteriaceae	Methanobrevibacter	Methanobrevibacter smithii	Methanobrevibacter smithii unclassified	0.55066
+Bacteria	Proteobacteria	Alphaproteobacteria	Rhodobacterales	Rhodobacteraceae	Rhodobacter	Rhodobacter sphaeroides	Rhodobacter sphaeroides unclassified	0.52051
+Bacteria	Firmicutes	Bacilli	Bacillales	Bacillaceae	Bacillus	Bacillus cereus thuringiensis	Bacillus cereus thuringiensis unclassified	0.15687
+Bacteria	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	Pseudomonas aeruginosa	Pseudomonas aeruginosa unclassified	0.14755
+Bacteria	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	Streptococcus	Streptococcus agalactiae	Streptococcus agalactiae unclassified	0.05124