Mercurial > repos > bebatut > export2graphlan

diff export2graphlan.xml @ 3:953621231a6c draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty
author bebatut
date Fri, 01 Apr 2016 05:51:29 -0400
parents f7e87cc38f57
children 4a3676d020e7
line wrap: on
line diff
--- a/export2graphlan.xml	Thu Mar 31 04:08:32 2016 -0400
+++ b/export2graphlan.xml	Fri Apr 01 05:51:29 2016 -0400
@@ -14,13 +14,13 @@
 
     <version_command>
 <![CDATA[
-python export2graphlan.py -v
+export2graphlan.py -v
 ]]>
     </version_command>
 
     <command>
 <![CDATA[        
-        python export2graphlan.py
+        export2graphlan.py
             -i $lefse_input
 
             #if $lefse_output
@@ -162,11 +162,38 @@
     <outputs>
         <data format="txt" name="tree" label="${tool.name} on ${on_string}: Tree" />
         <data format="txt" name="annotation" label="${tool.name} on ${on_string}: Annotation" />
-        
     </outputs>
 
     <tests>
         <test>
+            <param name="lefse_input" value="input_profile.tabular"/>
+            <param name="annotations" value=""/>
+            <param name="external_annotations" value=""/>
+            <param name="background_levels" value=""/>
+            <param name="background_clades" value=""/>
+            <param name="background_colors" value=""/>
+            <param name="title" value=""/>
+            <param name="title_font_size" value="15"/>
+            <param name="def_clade_size" value="10"/>
+            <param name="min_clade_size" value="20"/>
+            <param name="max_clade_size" value="200"/>
+            <param name="def_font_size" value="10"/>
+            <param name="min_font_size" value="8"/>
+            <param name="max_font_size" value="12"/>
+            <param name="annotation_legend_font_size" value="10"/>
+            <param name="abundance_threshold" value="20.0"/>
+            <param name="most_abundant" value=""/>
+            <param name="least_biomarkers" value=""/>
+            <param name="fname_row" value="0"/>
+            <param name="sname_row" value="0" />
+            <param name="metadata_rows" value=""/>
+            <param name="skip_rows" value=""/>
+            <param name="sperc" value=""/>
+            <param name="fperc" value=""/>
+            <param name="stop" value=""/>
+            <param name="ftop" value=""/>
+            <output name="annotation" file="output_annotation.txt"/>
+            <output name="tree" file="output_tree.txt"/>
         </test>
     </tests>