Mercurial > repos > bebatut > export2graphlan

comparison export2graphlan.xml @ 3:953621231a6c draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty
author bebatut
date Fri, 01 Apr 2016 05:51:29 -0400
parents f7e87cc38f57
children 4a3676d020e7
comparison
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2:d2b9ea71c6ed 3:953621231a6c
12 <stdio> 12 <stdio>
13 </stdio> 13 </stdio>
14 14
15 <version_command> 15 <version_command>
16 <![CDATA[ 16 <![CDATA[
17 python export2graphlan.py -v 17 export2graphlan.py -v
18 ]]> 18 ]]>
19 </version_command> 19 </version_command>
20 20
21 <command> 21 <command>
22 <![CDATA[ 22 <![CDATA[
23 python export2graphlan.py 23 export2graphlan.py
24 -i $lefse_input 24 -i $lefse_input
25 25
26 #if $lefse_output 26 #if $lefse_output
27 -o lefse_output 27 -o lefse_output
28 #end if 28 #end if
160 </inputs> 160 </inputs>
161 161
162 <outputs> 162 <outputs>
163 <data format="txt" name="tree" label="${tool.name} on ${on_string}: Tree" /> 163 <data format="txt" name="tree" label="${tool.name} on ${on_string}: Tree" />
164 <data format="txt" name="annotation" label="${tool.name} on ${on_string}: Annotation" /> 164 <data format="txt" name="annotation" label="${tool.name} on ${on_string}: Annotation" />
165
166 </outputs> 165 </outputs>
167 166
168 <tests> 167 <tests>
169 <test> 168 <test>
169 <param name="lefse_input" value="input_profile.tabular"/>
170 <param name="annotations" value=""/>
171 <param name="external_annotations" value=""/>
172 <param name="background_levels" value=""/>
173 <param name="background_clades" value=""/>
174 <param name="background_colors" value=""/>
175 <param name="title" value=""/>
176 <param name="title_font_size" value="15"/>
177 <param name="def_clade_size" value="10"/>
178 <param name="min_clade_size" value="20"/>
179 <param name="max_clade_size" value="200"/>
180 <param name="def_font_size" value="10"/>
181 <param name="min_font_size" value="8"/>
182 <param name="max_font_size" value="12"/>
183 <param name="annotation_legend_font_size" value="10"/>
184 <param name="abundance_threshold" value="20.0"/>
185 <param name="most_abundant" value=""/>
186 <param name="least_biomarkers" value=""/>
187 <param name="fname_row" value="0"/>
188 <param name="sname_row" value="0" />
189 <param name="metadata_rows" value=""/>
190 <param name="skip_rows" value=""/>
191 <param name="sperc" value=""/>
192 <param name="fperc" value=""/>
193 <param name="stop" value=""/>
194 <param name="ftop" value=""/>
195 <output name="annotation" file="output_annotation.txt"/>
196 <output name="tree" file="output_tree.txt"/>
170 </test> 197 </test>
171 </tests> 198 </tests>
172 199
173 <help><![CDATA[ 200 <help><![CDATA[
174 201