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comparison export2graphlan.xml @ 4:4a3676d020e7 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/export2graphlan/ commit 1b95965e1a861ec37867be554e324eb5bc1ece82-dirty
author bebatut
date Wed, 20 Apr 2016 06:08:58 -0400
parents 953621231a6c
children f05bc567f1a5
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3:953621231a6c 4:4a3676d020e7
1 <tool id="export2graphlan" name="Export to GraPhlAn" version="0.1.0"> 1 <tool id="export2graphlan" name="Export to GraPhlAn" version="0.19">
2 2
3 <description></description> 3 <description></description>
4 4
5 <requirements> 5 <requirements>
6 <requirement type="package" version="0.16">pandas</requirement> 6 <requirement type="package" version="0.16">pandas</requirement>
7 <requirement type="package" version="0.16">scipy</requirement> 7 <requirement type="package" version="0.16">scipy</requirement>
8 <requirement type="package" version="1.4">matplotlib</requirement> 8 <requirement type="package" version="1.4">matplotlib</requirement>
9 <requirement type="package" version="1.0">export2graphlan</requirement> 9 <requirement type="package" version="0.19">export2graphlan</requirement>
10 </requirements> 10 </requirements>
11 11
12 <stdio> 12 <stdio>
13 </stdio> 13 </stdio>
14 14
190 <param name="skip_rows" value=""/> 190 <param name="skip_rows" value=""/>
191 <param name="sperc" value=""/> 191 <param name="sperc" value=""/>
192 <param name="fperc" value=""/> 192 <param name="fperc" value=""/>
193 <param name="stop" value=""/> 193 <param name="stop" value=""/>
194 <param name="ftop" value=""/> 194 <param name="ftop" value=""/>
195 <output name="annotation" file="output_annotation.txt"/> 195 <output name="annotation" file="annotation_output.txt"/>
196 <output name="tree" file="output_tree.txt"/> 196 <output name="tree" file="tree_output.txt"/>
197 </test> 197 </test>
198 </tests> 198 </tests>
199 199
200 <help><![CDATA[ 200 <help><![CDATA[
201 201
202 **What it does** 202 **What it does**
203 203
204 export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn. In particular, the annotation file tries to highlight specific sub-trees deriving automatically from input file what nodes are important. For more information, check the 204 export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn. It can convert MetaPhlAn, LEfSe, and/or HUMAnN output to GraPhlAn input format
205
206 In particular, the annotation file tries to highlight specific sub-trees deriving automatically from input file what nodes are important.
207
208 For more information, check the
205 `user manual <https://bitbucket.org/CibioCM/export2graphlan/overview/>`_. 209 `user manual <https://bitbucket.org/CibioCM/export2graphlan/overview/>`_.
206 210
207 ]]></help> 211 ]]></help>
208 212
209 <citations> 213 <citations>