Mercurial > repos > bebatut > data_manager_qiime_database_downloader

changeset 2:451de7a72320 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 9a8e5333c047c6a5c18ca8f139a979704644ad87-dirty
author bebatut
date Wed, 03 May 2017 11:53:45 -0400
parents 7e531c146c03
children 80cfdc6e9ea6
files data_manager/data_manager_qiime_download.xml tool_data_table_conf.xml.sample
diffstat 2 files changed, 17 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_qiime_download.xml	Wed May 03 11:42:29 2017 -0400
+++ b/data_manager/data_manager_qiime_download.xml	Wed May 03 11:53:45 2017 -0400
@@ -42,7 +42,7 @@
                     <option value="104_release">104</option>
                 </param>
             </when>
-             <when value="unite">
+            <when value="unite">
                 <param name="version" type="select" label="Version of UNITE OTUs">
                     <option value="20.11.2016">7.1 (2016-11-20, with singletons set as RefS)</option>
                     <option value="s_20.11.2016">7.1 (2016-11-20, with global and 97% singletons)</option>
@@ -72,6 +72,8 @@
                     <option value="s_08.12.2013">6.0 (2013-12-08, with global and 97% singletons)</option>
                     <option value="15.10.2013">5.0 (2013-10-15, with singletons set as RefS)</option>   
                     <option value="s_15.10.2013">5.0 (2013-10-15, with global and 97% singletons)</option>
+                </param>
+            </when>
             <!--<when value="img">
                 <param name="version" type="select" label="Version of IMG/QIIME reference protein sequences">
                     <option value="img-qiime-25oct2012" selected="true">img-qiime-25oct2012</option>
--- a/tool_data_table_conf.xml.sample	Wed May 03 11:42:29 2017 -0400
+++ b/tool_data_table_conf.xml.sample	Wed May 03 11:53:45 2017 -0400
@@ -1,6 +1,18 @@
 <tables>
-    <table name="qiime_reference_db" comment_char="#">
+    <table name="qiime_rep_set" comment_char="#">
+        <columns>value, name, dbkey, path</columns>
+        <file path="tool-data/qiime_rep_set.loc" />
+    </table>
+    <table name="qiime_rep_set_aligned" comment_char="#">
         <columns>value, name, dbkey, path</columns>
-        <file path="tool-data/qiime_reference_db.loc" />
+        <file path="tool-data/qiime_rep_set_aligned.loc" />
+    </table>
+    <table name="qiime_taxonomy" comment_char="#">
+        <columns>value, name, dbkey, path</columns>
+        <file path="tool-data/qiime_taxonomy.loc" />
+    </table>
+    <table name="qiime_trees" comment_char="#">
+        <columns>value, name, dbkey, path</columns>
+        <file path="tool-data/qiime_trees.loc" />
     </table>
 </tables>
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