Mercurial > repos > bebatut > data_manager_qiime_database_downloader

comparison data_manager_conf.xml @ 0:9d0aeeeccb72 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 9a8e5333c047c6a5c18ca8f139a979704644ad87-dirty
author bebatut
date Wed, 03 May 2017 08:12:54 -0400
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children 5c3bf1589fcf
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-1:000000000000 0:9d0aeeeccb72
1 <?xml version="1.0"?>
2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_qiime_download.xml" id="data_manager_qiime_download" >
4 <data_table name="qiime_rep_set"> <!-- Defines a Data Table to be modified. -->
5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
9 <column name="path" output_ref="out_file" >
10 <move type="directory">
11 <source>${path}</source>
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime/rep_set/</target>
13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime/rep_set/${dbkey}</value_translation>
15 <value_translation type="function">abspath</value_translation>
16 </column>
17 </output>
18 </data_table>
19 <data_table name="qiime_rep_set_aligned"> <!-- Defines a Data Table to be modified. -->
20 <output> <!-- Handle the output of the Data Manager Tool -->
21 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
22 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
23 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
24 <column name="path" output_ref="out_file" >
25 <move type="directory">
26 <source>${path}</source>
27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime/rep_set_aligned/</target>
28 </move>
29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime/rep_set_aligned/${dbkey}</value_translation>
30 <value_translation type="function">abspath</value_translation>
31 </column>
32 </output>
33 </data_table>
34 <data_table name="qiime_taxonomy"> <!-- Defines a Data Table to be modified. -->
35 <output> <!-- Handle the output of the Data Manager Tool -->
36 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
37 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
38 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
39 <column name="path" output_ref="out_file" >
40 <move type="directory">
41 <source>${path}</source>
42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime/taxonomy/</target>
43 </move>
44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime/taxonomy/${dbkey}</value_translation>
45 <value_translation type="function">abspath</value_translation>
46 </column>
47 </output>
48 </data_table>
49 <data_table name="qiime_trees"> <!-- Defines a Data Table to be modified. -->
50 <output> <!-- Handle the output of the Data Manager Tool -->
51 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
52 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
53 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
54 <column name="path" output_ref="out_file" >
55 <move type="directory">
56 <source>${path}</source>
57 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime/trees/</target>
58 </move>
59 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime/trees/${dbkey}</value_translation>
60 <value_translation type="function">abspath</value_translation>
61 </column>
62 </output>
63 </data_table>
64 </data_manager>
65 </data_managers>