Mercurial > repos > bebatut > data_manager_qiime_database_downloader

comparison data_manager_conf.xml @ 10:5c3bf1589fcf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 9a8e5333c047c6a5c18ca8f139a979704644ad87-dirty
author bebatut
date Thu, 04 May 2017 14:31:25 -0400
parents 9d0aeeeccb72
children
comparison
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9:12695cdff13f 10:5c3bf1589fcf
5 <output> <!-- Handle the output of the Data Manager Tool --> 5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> 8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
9 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file" >
10 <move type="directory"> 10 <move type="file">
11 <source>${path}</source> 11 <source>${path}</source>
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime/rep_set/</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set/${dbkey}</target>
13 </move> 13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime/rep_set/${dbkey}</value_translation> 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set/${dbkey}</value_translation>
15 <value_translation type="function">abspath</value_translation> 15 <value_translation type="function">abspath</value_translation>
16 </column> 16 </column>
17 </output> 17 </output>
18 </data_table> 18 </data_table>
19 <data_table name="qiime_rep_set_aligned"> <!-- Defines a Data Table to be modified. --> 19 <data_table name="qiime_rep_set_aligned"> <!-- Defines a Data Table to be modified. -->
20 <output> <!-- Handle the output of the Data Manager Tool --> 20 <output> <!-- Handle the output of the Data Manager Tool -->
21 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 21 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
22 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 22 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
23 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> 23 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
24 <column name="path" output_ref="out_file" > 24 <column name="path" output_ref="out_file" >
25 <move type="directory"> 25 <move type="file">
26 <source>${path}</source> 26 <source>${path}</source>
27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime/rep_set_aligned/</target> 27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_rep_set_aligned/${dbkey}</target>
28 </move> 28 </move>
29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime/rep_set_aligned/${dbkey}</value_translation> 29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_rep_set_aligned/${dbkey}</value_translation>
30 <value_translation type="function">abspath</value_translation> 30 <value_translation type="function">abspath</value_translation>
31 </column> 31 </column>
32 </output> 32 </output>
33 </data_table> 33 </data_table>
34 <data_table name="qiime_taxonomy"> <!-- Defines a Data Table to be modified. --> 34 <data_table name="qiime_taxonomy"> <!-- Defines a Data Table to be modified. -->
35 <output> <!-- Handle the output of the Data Manager Tool --> 35 <output> <!-- Handle the output of the Data Manager Tool -->
36 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 36 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
37 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 37 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
38 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> 38 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
39 <column name="path" output_ref="out_file" > 39 <column name="path" output_ref="out_file" >
40 <move type="directory"> 40 <move type="file">
41 <source>${path}</source> 41 <source>${path}</source>
42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime/taxonomy/</target> 42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_taxonomy/${dbkey}</target>
43 </move> 43 </move>
44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime/taxonomy/${dbkey}</value_translation> 44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_taxonomy/${dbkey}</value_translation>
45 <value_translation type="function">abspath</value_translation> 45 <value_translation type="function">abspath</value_translation>
46 </column> 46 </column>
47 </output> 47 </output>
48 </data_table> 48 </data_table>
49 <data_table name="qiime_trees"> <!-- Defines a Data Table to be modified. --> 49 <data_table name="qiime_trees"> <!-- Defines a Data Table to be modified. -->
50 <output> <!-- Handle the output of the Data Manager Tool --> 50 <output> <!-- Handle the output of the Data Manager Tool -->
51 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 51 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
52 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 52 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
53 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> 53 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
54 <column name="path" output_ref="out_file" > 54 <column name="path" output_ref="out_file" >
55 <move type="directory"> 55 <move type="file">
56 <source>${path}</source> 56 <source>${path}</source>
57 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime/trees/</target> 57 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">qiime_trees/${dbkey}</target>
58 </move> 58 </move>
59 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime/trees/${dbkey}</value_translation> 59 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/qiime_trees/${dbkey}</value_translation>
60 <value_translation type="function">abspath</value_translation> 60 <value_translation type="function">abspath</value_translation>
61 </column> 61 </column>
62 </output> 62 </output>
63 </data_table> 63 </data_table>
64 </data_manager> 64 </data_manager>