Mercurial > repos > bebatut > data_manager_humann2_database_downloader
changeset 13:cf09cf9e4937 draft default tip
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit 7cd9f9fcd14269c126ab35de7b21fb182604c15b-dirty
| author | bebatut |
|---|---|
| date | Tue, 05 Sep 2017 07:11:23 -0400 |
| parents | 4637911a7fd1 |
| children | |
| files | data_manager/data_manager_humann2_download.py data_manager/data_manager_humann2_download.xml |
| diffstat | 2 files changed, 6 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/data_manager_humann2_download.py Fri Jun 23 04:57:26 2017 -0400 +++ b/data_manager/data_manager_humann2_download.py Tue Sep 05 07:11:23 2017 -0400 @@ -112,13 +112,17 @@ value = "%s-%s-%s" % (database, build, datetime.date.today().isoformat()) db_target_dir = os.path.join(target_dir, database) build_target_dir = os.path.join(db_target_dir, build) - os.makedirs(build_target_dir) + #os.makedirs(build_target_dir) cmd = "humann2_databases --download %s %s %s --update-config no" % ( database, build, db_target_dir) subprocess.check_call(cmd, shell=True) + print(os.path.join(db_target_dir, database)) + print(os.listdir(os.path.join(db_target_dir, database))) + print(build_target_dir) shutil.move(os.path.join(db_target_dir, database), build_target_dir) + print(os.listdir(build_target_dir)) add_data_table_entry( data_tables, table_name,
--- a/data_manager/data_manager_humann2_download.xml Fri Jun 23 04:57:26 2017 -0400 +++ b/data_manager/data_manager_humann2_download.xml Tue Sep 05 07:11:23 2017 -0400 @@ -1,7 +1,7 @@ <tool id="data_manager_humann2_download" name="HUMAnN2 download" version="@VERSION@.0" tool_type="manage_data"> <description>Download HUMAnN2 database</description> <macros> - <token name="@VERSION@">0.9.9</token> + <token name="@VERSION@">0.11.1</token> </macros> <requirements> <requirement type="package" version="@VERSION@">humann2</requirement>