Mercurial > repos > bebatut > data_manager_humann2_database_downloader

changeset 12:4637911a7fd1 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit 811025ef8d9f60f4b02d66f7218127669fb42e0b-dirty
author bebatut
date Fri, 23 Jun 2017 04:57:26 -0400
parents 6d599ff6e675
children cf09cf9e4937
files data_manager/data_manager_humann2_download.py
diffstat 1 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_humann2_download.py	Tue Jun 13 03:42:09 2017 -0400
+++ b/data_manager/data_manager_humann2_download.py	Fri Jun 23 04:57:26 2017 -0400
@@ -113,9 +113,10 @@
     db_target_dir = os.path.join(target_dir, database)
     build_target_dir = os.path.join(db_target_dir, build)
     os.makedirs(build_target_dir)
-    cmd = "humann2_databases --download %s %s %s" % (database,
-                                                     build,
-                                                     db_target_dir)
+    cmd = "humann2_databases --download %s %s %s --update-config no" % (
+        database,
+        build,
+        db_target_dir)
     subprocess.check_call(cmd, shell=True)
     shutil.move(os.path.join(db_target_dir, database), build_target_dir)
     add_data_table_entry(