Mercurial > repos > bebatut > data_manager_humann2_database_downloader

changeset 10:023350005f5e draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit 16672a1e1a76c5f32d5068a6c5ee238d4ae2852a-dirty
author bebatut
date Tue, 13 Jun 2017 03:30:50 -0400
parents cb9dac6233f2
children 6d599ff6e675
files data_manager/data_manager_humann2_download.py data_manager/macros.xml
diffstat 2 files changed, 2 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_humann2_download.py	Tue Jun 13 02:47:14 2017 -0400
+++ b/data_manager/data_manager_humann2_download.py	Tue Jun 13 03:30:50 2017 -0400
@@ -5,6 +5,7 @@
 import json
 import optparse
 import os
+import shutil
 import subprocess
 import sys
 
@@ -116,9 +117,7 @@
                                                      build,
                                                      db_target_dir)
     subprocess.check_call(cmd, shell=True)
-    print(os.listdir(db_target_dir))
-    os.rename(os.path.join(db_target_dir, database), build_target_dir)
-    print(os.listdir(db_target_dir))
+    shutil.move(os.path.join(db_target_dir, database), build_target_dir)
     add_data_table_entry(
         data_tables,
         table_name,
--- a/data_manager/macros.xml	Tue Jun 13 02:47:14 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-<?xml version="1.0" ?>
-<macros>
-    <token name="@VERSION@">0.9.9</token>
-</macros>
\ No newline at end of file