Mercurial > repos > bebatut > data_manager_humann2_database_downloader

comparison data_manager_conf.xml @ 0:a2a638c83c7c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_gemini_database_downloader commit b'f126d56aa160b10437d9dabf5c9e32fd4569fee6\n'-dirty
author bebatut
date Mon, 20 Feb 2017 08:58:50 -0500
parents
children 71114ccf1026
comparison
equal deleted inserted replaced
-1:000000000000 0:a2a638c83c7c
1 <?xml version="1.0"?>
2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_humann2_download.xml" id="data_manager_humann2_download" >
4 <data_table name="humann2_nucleotide_database"> <!-- Defines a Data Table to be modified. -->
5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
9 <column name="path" output_ref="out_file" >
10 <move type="directory" relativize_symlinks="True">
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/nucleotide_database/${dbkey}</target>
12 </move>
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/nucleotide_database/${dbkey}</value_translation>
14 <value_translation type="function">abspath</value_translation>
15 </column>
16 </output>
17 </data_table>
18 <data_table name="humann2_protein_database"> <!-- Defines a Data Table to be modified. -->
19 <output> <!-- Handle the output of the Data Manager Tool -->
20 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
21 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
22 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
23 <column name="path" output_ref="out_file" >
24 <move type="directory" relativize_symlinks="True">
25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann2/data/protein_database/${dbkey}</target>
26 </move>
27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann2/data/protein_database/${dbkey}</value_translation>
28 <value_translation type="function">abspath</value_translation>
29 </column>
30 </output>
31 </data_table>
32 </data_manager>
33 </data_managers>
34