Mercurial > repos > bebatut > compare_humann2_output
diff test-data/specific_to_sample2_output.txt @ 1:22e031055f18 draft
planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/compare_humann2_output commit c16428041ae3d60b61b6570035c9268726730543-dirty
| author | bebatut |
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| date | Wed, 20 Apr 2016 08:29:20 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/specific_to_sample2_output.txt Wed Apr 20 08:29:20 2016 -0400 @@ -0,0 +1,252 @@ +id name abundances +PWY-6731 starch degradation III 0.0336222 +GLUDEG-I-PWY GABA shunt 0.0537709 +PWY-6123 inosine 5 phosphate biosynthesis I 0.831965 +PWY-6769 rhamnogalacturonan type I degradation I |unclassified 0.139081 +PWY-6471 peptidoglycan biosynthesis IV 0.0698193 +PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II 1.48474 +PPGPPMET-PWY ppGpp biosynthesis 0.203621 +PWY-7234 inosine 5 phosphate biosynthesis III 0.045368 +PWY-5686 UMP biosynthesis|unclassified 1.7892 +PWY-3841 folate transformations II 2.38544 +P185-PWY formaldehyde assimilation III 0.103843 +ILEUSYN-PWY L isoleucine biosynthesis I 1.29401 +PWY-3001 superpathway of L isoleucine biosynthesis I 0.142024 +PWY-5754 4 hydroxybenzoate biosynthesis I |unclassified 0.229464 +PWY-6737 starch degradation V|unclassified 0.316335 +PWY-5104 L isoleucine biosynthesis IV 0.831272 +PWY-7242 D fructuronate degradation 1.03935 +OANTIGEN-PWY O antigen building blocks biosynthesis 0.321981 +PWY-5667 CDP diacylglycerol biosynthesis I|unclassified 0.149856 +PWY-6606 guanosine nucleotides degradation II|unclassified 0.247734 +PWY66-422 D galactose degradation V |unclassified 1.04266 +PWY66-400 glycolysis VI 0.938218 +PWY66-389 phytol degradation 0.548391 +PWY-5097 L lysine biosynthesis VI 1.04893 +1CMET2-PWY N10 formyl tetrahydrofolate biosynthesis|unclassified 0.834716 +PWY-6386 UDP N acetylmuramoyl pentapeptide biosynthesis II 0.0904748 +PWY4LZ-257 superpathway of fermentation 0.147873 +PWY-6549 L glutamine biosynthesis III 0.508899 +GLCMANNANAUT-PWY superpathway of N acetylglucosamine, N acetylmannosamine and N acetylneuraminate degradation|unclassified 0.123299 +PWY-7111 pyruvate fermentation to isobutanol |unclassified 1.73067 +PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I 0.850699 +PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD ME type 0.187881 +P241-PWY coenzyme B biosynthesis|unclassified 0.0707035 +PWY-6124 inosine 5 phosphate biosynthesis II|unclassified 2.22455 +PWY-5173 superpathway of acetyl CoA biosynthesis|unclassified 0.0785602 +PWY-7316 dTDP N acetylviosamine biosynthesis 0.542069 +PWY-5101 L isoleucine biosynthesis II|unclassified 0.617859 +PEPTIDOGLYCANSYN-PWY peptidoglycan biosynthesis I |unclassified 1.16221 +PWY-6769 rhamnogalacturonan type I degradation I 0.0634893 +GLUCUROCAT-PWY superpathway of β D glucuronide and D glucuronate degradation 0.838546 +PWY-7219 adenosine ribonucleotides de novo biosynthesis|unclassified 3.33171 +PWY4LZ-257 superpathway of fermentation |unclassified 0.318099 +ARGSYN-PWY L arginine biosynthesis I 1.16946 +PWY-5100 pyruvate fermentation to acetate and lactate II|unclassified 1.26625 +ARO-PWY chorismate biosynthesis I 0.39449 +ARGSYNBSUB-PWY L arginine biosynthesis II 1.02161 +PWY-6936 seleno amino acid biosynthesis 1.2799 +PWY-6595 superpathway of guanosine nucleotides degradation |unclassified 0.225538 +ANAGLYCOLYSIS-PWY glycolysis III 1.03937 +PWY0-162 superpathway of pyrimidine ribonucleotides de novo biosynthesis|unclassified 0.295685 +PWY-841 superpathway of purine nucleotides de novo biosynthesis I 0.531622 +PWY-5505 L glutamate and L glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 1.44739 +THRESYN-PWY superpathway of L threonine biosynthesis|unclassified 0.188356 +PWY-5941 glycogen degradation II 0.127166 +PWY-7094 fatty acid salvage 0.0597229 +CITRULBIO-PWY L citrulline biosynthesis|unclassified 0.49408 +PWY-7221 guanosine ribonucleotides de novo biosynthesis 1.88123 +ARGSYNBSUB-PWY L arginine biosynthesis II |unclassified 1.31054 +PWY-6630 superpathway of L tyrosine biosynthesis 0.319673 +RIBOSYN2-PWY flavin biosynthesis I |unclassified 0.213182 +PWY-2942 L lysine biosynthesis III|unclassified 1.10762 +PWY-7094 fatty acid salvage|unclassified 0.125407 +PWY-1042 glycolysis IV |unclassified 1.93529 +VALSYN-PWY L valine biosynthesis 1.29401 +PWY-6277 superpathway of 5 aminoimidazole ribonucleotide biosynthesis|unclassified 0.521078 +PWY-7219 adenosine ribonucleotides de novo biosynthesis 1.57923 +PWY-6309 L tryptophan degradation XI 0.0615914 +PWY-6703 preQ0 biosynthesis|unclassified 1.3368 +PWY-7007 methyl ketone biosynthesis 0.0659038 +PWY0-1319 CDP diacylglycerol biosynthesis II 0.384585 +PWY-5030 L histidine degradation III|unclassified 1.20381 +PWY0-162 superpathway of pyrimidine ribonucleotides de novo biosynthesis 1.19161 +1CMET2-PWY N10 formyl tetrahydrofolate biosynthesis 2.12689 +VALSYN-PWY L valine biosynthesis|unclassified 1.59474 +PWY-5857 ubiquinol 10 biosynthesis |unclassified 0.342548 +PWY-5505 L glutamate and L glutamine biosynthesis 1.53682 +PWY-6387 UDP N acetylmuramoyl pentapeptide biosynthesis I |unclassified 0.973219 +GLYCOLYSIS glycolysis I 0.769956 +PWY-6387 UDP N acetylmuramoyl pentapeptide biosynthesis I 0.731247 +PWY-7208 superpathway of pyrimidine nucleobases salvage|unclassified 1.75918 +PWY-5136 fatty acid β oxidation II |unclassified 0.144209 +PWY-6122 5 aminoimidazole ribonucleotide biosynthesis II|unclassified 0.521078 +PWY-2942 L lysine biosynthesis III 0.959218 +PWY-7222 guanosine deoxyribonucleotides de novo biosynthesis II|unclassified 2.01368 +PWY-6277 superpathway of 5 aminoimidazole ribonucleotide biosynthesis 0.237867 +PWY-6126 superpathway of adenosine nucleotides de novo biosynthesis II|unclassified 2.44065 +ANAEROFRUCAT-PWY homolactic fermentation|unclassified 1.57977 +PWY0-1061 superpathway of L alanine biosynthesis|unclassified 0.374653 +PYRIDNUCSYN-PWY NAD biosynthesis I |unclassified 0.68348 +GLYOXYLATE-BYPASS glyoxylate cycle|unclassified 0.0395503 +GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation 0.0175574 +PWY-4984 urea cycle 1.18794 +PWY-6549 L glutamine biosynthesis III|unclassified 0.776607 +PWY-6385 peptidoglycan biosynthesis III |unclassified 0.930133 +PWY0-1319 CDP diacylglycerol biosynthesis II|unclassified 0.149856 +PHOSLIPSYN-PWY superpathway of phospholipid biosynthesis I 0.460395 +FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation 0.744755 +PWY-7398 coumarins biosynthesis |unclassified 0.0600083 +PYRIDNUCSYN-PWY NAD biosynthesis I 0.361602 +PYRIDOXSYN-PWY pyridoxal 5 phosphate biosynthesis I|unclassified 3.41296 +NONOXIPENT-PWY pentose phosphate pathway 0.862082 +PWY-5941 glycogen degradation II |unclassified 0.241599 +P161-PWY acetylene degradation|unclassified 0.261072 +PWY-6126 superpathway of adenosine nucleotides de novo biosynthesis II 1.50984 +HOMOSER-METSYN-PWY L methionine biosynthesis I|unclassified 1.09381 +PWY-6731 starch degradation III|unclassified 0.0708616 +PWY-6125 superpathway of guanosine nucleotides de novo biosynthesis II 1.55645 +PWY-6435 4 hydroxybenzoate biosynthesis V 0.125364 +PWY66-389 phytol degradation|unclassified 0.638472 +TRNA-CHARGING-PWY tRNA charging 0.946058 +PWY-7237 myo , chiro and scillo inositol degradation 0.520322 +PWY-6527 stachyose degradation|unclassified 0.683934 +PWY-7007 methyl ketone biosynthesis|unclassified 0.122854 +PWY-6124 inosine 5 phosphate biosynthesis II 1.01549 +PWY-5690 TCA cycle II |unclassified 0.358601 +PWY0-1586 peptidoglycan maturation 0.0751931 +PWY-5100 pyruvate fermentation to acetate and lactate II 1.70667 +GLUCONEO-PWY gluconeogenesis I 1.18442 +PWY66-400 glycolysis VI |unclassified 0.933907 +PWY-5104 L isoleucine biosynthesis IV|unclassified 0.65428 +PWY-5754 4 hydroxybenzoate biosynthesis I 0.104748 +PWY-1042 glycolysis IV 1.75553 +PWY-4041 γ glutamyl cycle|unclassified 0.0590201 +SO4ASSIM-PWY sulfate reduction I 0.00696955 +THRESYN-PWY superpathway of L threonine biosynthesis 0.0904039 +PWY-6703 preQ0 biosynthesis 1.39768 +PWY-6163 chorismate biosynthesis from 3 dehydroquinate|unclassified 0.781711 +PWY-7229 superpathway of adenosine nucleotides de novo biosynthesis I 1.55872 +PWY-7229 superpathway of adenosine nucleotides de novo biosynthesis I|unclassified 2.61337 +PWY-3001 superpathway of L isoleucine biosynthesis I|unclassified 0.27671 +SER-GLYSYN-PWY superpathway of L serine and glycine biosynthesis I|unclassified 0.288758 +PWY-7111 pyruvate fermentation to isobutanol 0.876945 +CALVIN-PWY Calvin Benson Bassham cycle 1.79034 +PWY-5855 ubiquinol 7 biosynthesis 0.15637 +PWY-5097 L lysine biosynthesis VI|unclassified 1.16003 +HOMOSER-METSYN-PWY L methionine biosynthesis I 1.58217 +PWY66-422 D galactose degradation V |g__Bacteroides.s__Bacteroides_stercoris 1.49592 +PWY-7237 myo , chiro and scillo inositol degradation|unclassified 1.13983 +PYRIDOXSYN-PWY pyridoxal 5 phosphate biosynthesis I 2.45442 +PWY-5855 ubiquinol 7 biosynthesis |unclassified 0.342548 +PWY-5659 GDP mannose biosynthesis 1.3223 +FASYN-INITIAL-PWY superpathway of fatty acid biosynthesis initiation |unclassified 0.788309 +PWY-6507 4 deoxy L threo hex 4 enopyranuronate degradation 1.00585 +PWY-7388 octanoyl [acyl carrier protein] biosynthesis 0.409733 +PWY-6435 4 hydroxybenzoate biosynthesis V|unclassified 0.274625 +PWY-6122 5 aminoimidazole ribonucleotide biosynthesis II 0.237867 +PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis|unclassified 0.109947 +PWY4FS-7 phosphatidylglycerol biosynthesis I 0.518363 +PWY-6121 5 aminoimidazole ribonucleotide biosynthesis I|unclassified 0.566097 +PWY-5103 L isoleucine biosynthesis III|unclassified 0.718443 +PWY-7316 dTDP N acetylviosamine biosynthesis|unclassified 1.10149 +ILEUSYN-PWY L isoleucine biosynthesis I |unclassified 1.59474 +GALACTUROCAT-PWY D galacturonate degradation I 1.12548 +P161-PWY acetylene degradation 0.119177 +PWY-5030 L histidine degradation III 1.22713 +PWY-5484 glycolysis II |unclassified 1.34471 +GLYCOL-GLYOXDEG-PWY superpathway of glycol metabolism and degradation|unclassified 0.0384618 +PWY-7211 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 0.250236 +GLYOXYLATE-BYPASS glyoxylate cycle 0.0182141 +PWY-7228 superpathway of guanosine nucleotides de novo biosynthesis I 1.69262 +PWY-6527 stachyose degradation 0.354951 +GLUTORN-PWY L ornithine biosynthesis 0.808734 +PWY-7400 L arginine biosynthesis IV 1.18235 +PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II|unclassified 2.01368 +ARO-PWY chorismate biosynthesis I|unclassified 0.783533 +PWY-4041 γ glutamyl cycle 0.0269421 +BRANCHED-CHAIN-AA-SYN-PWY superpathway of branched amino acid biosynthesis|unclassified 0.857417 +CALVIN-PWY Calvin Benson Bassham cycle|unclassified 2.40344 +PWY-5690 TCA cycle II 0.322218 +P105-PWY TCA cycle IV 0.262013 +PWY-5136 fatty acid β oxidation II 0.0698245 +PWY-6471 peptidoglycan biosynthesis IV |unclassified 0.142191 +PWY-6386 UDP N acetylmuramoyl pentapeptide biosynthesis II |unclassified 0.183333 +PWY-5464 superpathway of cytosolic glycolysis , pyruvate dehydrogenase and TCA cycle 0.0992505 +PWY-7208 superpathway of pyrimidine nucleobases salvage 2.06908 +ANAGLYCOLYSIS-PWY glycolysis III |unclassified 1.85171 +PWY-6309 L tryptophan degradation XI |unclassified 0.134924 +PWY4FS-8 phosphatidylglycerol biosynthesis II 0.518363 +PWY0-1061 superpathway of L alanine biosynthesis 0.216957 +PWY0-1586 peptidoglycan maturation |unclassified 0.14413 +PWY-7220 adenosine deoxyribonucleotides de novo biosynthesis II 1.48474 +P441-PWY superpathway of N acetylneuraminate degradation 0.162577 +SER-GLYSYN-PWY superpathway of L serine and glycine biosynthesis I 1.2955 +PWY-7398 coumarins biosynthesis 0.0273932 +UDPNAGSYN-PWY UDP N acetyl D glucosamine biosynthesis I|unclassified 0.656183 +PWY-5154 L arginine biosynthesis III 0.881081 +PWY-5484 glycolysis II 0.749543 +UDPNAGSYN-PWY UDP N acetyl D glucosamine biosynthesis I 0.338583 +ANAEROFRUCAT-PWY homolactic fermentation 0.88 +THISYNARA-PWY superpathway of thiamin diphosphate biosynthesis III |unclassified 0.21303 +PWY-6123 inosine 5 phosphate biosynthesis I|unclassified 1.82252 +PWY-6121 5 aminoimidazole ribonucleotide biosynthesis I 0.258418 +COA-PWY-1 coenzyme A biosynthesis II 1.9437 +PWY-6936 seleno amino acid biosynthesis|unclassified 1.32349 +PWY-6163 chorismate biosynthesis from 3 dehydroquinate 0.410329 +PWY-5667 CDP diacylglycerol biosynthesis I 0.384585 +PWY-7184 pyrimidine deoxyribonucleotides de novo biosynthesis I 0.770993 +PWY-3841 folate transformations II|unclassified 2.27477 +CITRULBIO-PWY L citrulline biosynthesis 0.974607 +RHAMCAT-PWY L rhamnose degradation I 0.539026 +PWY-724 superpathway of L lysine, L threonine and L methionine biosynthesis II|unclassified 0.29625 +GLUTORN-PWY L ornithine biosynthesis|unclassified 0.900908 +PWY-5265 peptidoglycan biosynthesis II |unclassified 0.209837 +PWY-5464 superpathway of cytosolic glycolysis , pyruvate dehydrogenase and TCA cycle|unclassified 0.172005 +PWY-6606 guanosine nucleotides degradation II 0.113088 +OANTIGEN-PWY O antigen building blocks biosynthesis |unclassified 0.620846 +PWY-7388 octanoyl [acyl carrier protein] biosynthesis |unclassified 0.641891 +P185-PWY formaldehyde assimilation III |unclassified 0.115303 +METHGLYUT-PWY superpathway of methylglyoxal degradation 0.226728 +PWY-6737 starch degradation V 0.201137 +PWY-724 superpathway of L lysine, L threonine and L methionine biosynthesis II 0.142842 +NONOXIPENT-PWY pentose phosphate pathway |unclassified 1.8885 +DAPLYSINESYN-PWY L lysine biosynthesis I 0.35429 +PWY-6628 superpathway of L phenylalanine biosynthesis 0.49241 +THISYNARA-PWY superpathway of thiamin diphosphate biosynthesis III 0.0973654 +PWY-6385 peptidoglycan biosynthesis III 0.820786 +PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis 0.0501896 +ASPASN-PWY superpathway of L aspartate and L asparagine biosynthesis 1.09751 +P105-PWY TCA cycle IV |unclassified 0.340536 +TRNA-CHARGING-PWY tRNA charging|unclassified 0.526713 +GALACT-GLUCUROCAT-PWY superpathway of hexuronide and hexuronate degradation 0.391566 +PWY-5173 superpathway of acetyl CoA biosynthesis 0.0372086 +FAO-PWY fatty acid β oxidation I 0.0714249 +P241-PWY coenzyme B biosynthesis 0.0322755 +COMPLETE-ARO-PWY superpathway of aromatic amino acid biosynthesis|unclassified 0.862669 +HISDEG-PWY L histidine degradation I 0.519408 +COMPLETE-ARO-PWY superpathway of aromatic amino acid biosynthesis 0.439273 +DAPLYSINESYN-PWY L lysine biosynthesis I|unclassified 0.314147 +PWY-5103 L isoleucine biosynthesis III 0.831677 +GLUDEG-I-PWY GABA shunt|unclassified 0.1173 +GLCMANNANAUT-PWY superpathway of N acetylglucosamine, N acetylmannosamine and N acetylneuraminate degradation 0.0651572 +P441-PWY superpathway of N acetylneuraminate degradation|unclassified 0.204428 +PWY-5686 UMP biosynthesis 0.980672 +PWY-6595 superpathway of guanosine nucleotides degradation 0.102956 +PWY66-422 D galactose degradation V 1.75745 +PWY-5505 L glutamate and L glutamine biosynthesis|unclassified 1.96045 +PWY-6305 putrescine biosynthesis IV 0.333385 +HISDEG-PWY L histidine degradation I|unclassified 0.770332 +PWY-5659 GDP mannose biosynthesis|unclassified 0.106616 +FAO-PWY fatty acid β oxidation I|unclassified 0.148771 +METHGLYUT-PWY superpathway of methylglyoxal degradation|unclassified 0.496676 +DENOVOPURINE2-PWY superpathway of purine nucleotides de novo biosynthesis II 0.14462 +PWY-5857 ubiquinol 10 biosynthesis 0.15637 +PWY-5101 L isoleucine biosynthesis II 0.492461 +RIBOSYN2-PWY flavin biosynthesis I 0.11474 +SO4ASSIM-PWY sulfate reduction I |unclassified 0.015138 +BRANCHED-CHAIN-AA-SYN-PWY superpathway of branched amino acid biosynthesis 1.02856 +PWY-5265 peptidoglycan biosynthesis II 0.106882 +ASPASN-PWY superpathway of L aspartate and L asparagine biosynthesis|unclassified 1.92205 +PWY-7234 inosine 5 phosphate biosynthesis III|unclassified 0.0993843 +GLYCOLYSIS glycolysis I |unclassified 1.37456