Mercurial > repos > bebatut > compare_humann2_output

comparison compare_humann2_output.xml @ 1:22e031055f18 draft

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planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/compare_humann2_output commit c16428041ae3d60b61b6570035c9268726730543-dirty
author bebatut
date Wed, 20 Apr 2016 08:29:20 -0400
parents 035a848cb73e
children 9c24aa6d9a1f
comparison
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0:035a848cb73e 1:22e031055f18
50 </collection> 50 </collection>
51 51
52 </outputs> 52 </outputs>
53 53
54 <tests> 54 <tests>
55 <test>
56 <param name="samples_0|sample_name" value="sample1"/>
57 <param name="samples_0|input" value="humann2_m8_pathabundance_cmp_renormalized.tsv"/>
58 <param name="samples_1|sample_name" value="sample2"/>
59 <param name="samples_1|input" value="humann2_fasta_pathabundance_relab_renormalized.csv"/>
60 <param name="charact_nb" value="10"/>
61 <output name="more_abundant_output_file" file="more_abundant_output.tabular"/>
62 <output name="similar_output_file" file="similar_output.tabular"/>
63 <output name="log" file="log_output.txt"/>
64 <output_collection name="specific_files" type="list">
65 <element name="specific_to_sample1" file="specific_to_sample1_output.txt" />
66 <element name="specific_to_sample2" file="specific_to_sample2_output.txt" />
67 </output_collection>
68 </test>
55 </tests> 69 </tests>
56 70
57 <help><![CDATA[ 71 <help><![CDATA[
58 **What it does** 72 **What it does**
59 73
60 This tool compare HUMANnN2 outputs with gene families or pathways relative abundances of several samples and extract several files: 74 This tool compare HUMANnN2 outputs with gene families or pathways and their relative abundances between several samples. Several files are extracted:
61 75
62 - Similar gene families or pathways between the samples and the relative abundances and these similar characteristics 76 * Similar gene families or pathways between the samples and the relative abundances of these similar characteristics
63 - Most abundant gene families or pathways for each sample and the corresponding relative abundance in all samples 77
78 * Most abundant gene families or pathways for each sample and the corresponding relative abundance in all samples
79
80 * Specific gene families and pathways for each samples and the relative abundances of these specific characteristics
64 81
65 ]]></help> 82 ]]></help>
66 83
67 <citations> 84 <citations>
68 </citations> 85 </citations>