Mercurial > repos > bebatut > combine_metaphlan2_humann2

diff combine_metaphlan2_humann2.xml @ 1:3f55cd32b941 draft default tip

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planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit e6bee6545960c2a1ae3ca3031ec74d7c26d0b0ce-dirty
author bebatut
date Fri, 15 Apr 2016 09:14:31 -0400
parents b9809b6ee179
children
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--- a/combine_metaphlan2_humann2.xml	Tue Apr 12 02:55:42 2016 -0400
+++ b/combine_metaphlan2_humann2.xml	Fri Apr 15 09:14:31 2016 -0400
@@ -47,12 +47,26 @@
     </outputs>
 
     <tests>
+    	<test>
+    		 <param name="metaphlan2_file" value="metaphlan2_input.txt"/>
+    		 <param name="humann2_file" value="humann2_gene_families_input.tabular"/>
+    		 <param name='type' value="gene_families"/>
+    		 <output name="gene_families_output_file" file="gene_families_output.tabular"/>
+    	</test>
+    	<test>
+    		 <param name="metaphlan2_file" value="metaphlan2_input.txt"/>
+    		 <param name="humann2_file" value="humann2_pathways_input.tabular"/>
+    		 <param name='type' value="pathways"/>
+    		 <output name="pathway_output_file" file="pathways_output.tabular"/>
+    	</test>
     </tests>
 
     <help><![CDATA[
-        **What it does**
+**What it does**
 
-        This tool combine MetaPhlAn2 outputs and HUMANnN2 outputs to get, for each gene families/pathways and the corresponding taxonomic stratification, relative abundance of this gene family/pathway and the relative abundance of corresponding species and genus.
+This tool combine MetaPhlAn2 outputs and HUMANnN2 outputs.
+
+For each gene families/pathways and the corresponding taxonomic stratification, you get relative abundance of this gene family/pathway and the relative abundance of corresponding species and genus.
     ]]></help>
 
     <citations>