Mercurial > repos > bebatut > combine_metaphlan2_humann2

comparison combine_metaphlan2_humann2.xml @ 1:3f55cd32b941 draft default tip

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planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit e6bee6545960c2a1ae3ca3031ec74d7c26d0b0ce-dirty
author bebatut
date Fri, 15 Apr 2016 09:14:31 -0400
parents b9809b6ee179
children
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0:b9809b6ee179 1:3f55cd32b941
45 <filter>type=="pathways"</filter> 45 <filter>type=="pathways"</filter>
46 </data> 46 </data>
47 </outputs> 47 </outputs>
48 48
49 <tests> 49 <tests>
50 <test>
51 <param name="metaphlan2_file" value="metaphlan2_input.txt"/>
52 <param name="humann2_file" value="humann2_gene_families_input.tabular"/>
53 <param name='type' value="gene_families"/>
54 <output name="gene_families_output_file" file="gene_families_output.tabular"/>
55 </test>
56 <test>
57 <param name="metaphlan2_file" value="metaphlan2_input.txt"/>
58 <param name="humann2_file" value="humann2_pathways_input.tabular"/>
59 <param name='type' value="pathways"/>
60 <output name="pathway_output_file" file="pathways_output.tabular"/>
61 </test>
50 </tests> 62 </tests>
51 63
52 <help><![CDATA[ 64 <help><![CDATA[
53 **What it does** 65 **What it does**
54 66
55 This tool combine MetaPhlAn2 outputs and HUMANnN2 outputs to get, for each gene families/pathways and the corresponding taxonomic stratification, relative abundance of this gene family/pathway and the relative abundance of corresponding species and genus. 67 This tool combine MetaPhlAn2 outputs and HUMANnN2 outputs.
68
69 For each gene families/pathways and the corresponding taxonomic stratification, you get relative abundance of this gene family/pathway and the relative abundance of corresponding species and genus.
56 ]]></help> 70 ]]></help>
57 71
58 <citations> 72 <citations>
59 </citations> 73 </citations>
60 </tool> 74 </tool>