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changeset 2:aa923171e225 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/cdhit/ commit 8b1037213553ecffa32f15a499407cba816ab62b-dirty
author bebatut
date Thu, 14 Apr 2016 09:24:49 -0400
parents 2f0a6f227f87
children 626cd6334dbc
files cd_hit_est.xml cd_hit_protein.xml cdhit_macros.xml tool_dependencies.xml
diffstat 4 files changed, 12 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/cd_hit_est.xml	Tue Apr 12 02:54:39 2016 -0400
+++ b/cd_hit_est.xml	Thu Apr 14 09:24:49 2016 -0400
@@ -1,13 +1,11 @@
-<tool id="cd_hit_est" name="CD-HIT-EST" version="1.2">
+<tool id="cd_hit_est" name="CD-HIT-EST" version="1.3">
   <description>Cluster a nucleotide dataset into representative sequences</description>
 
   <macros>
     <import>cdhit_macros.xml</import>
   </macros>
 
-  <requirements>
-    <requirement type="package" version="4.6.1">cd-hit</requirement>
-  </requirements>
+  <expand macro="requirements"/>
 
   <command><![CDATA[
     cd-hit-est
--- a/cd_hit_protein.xml	Tue Apr 12 02:54:39 2016 -0400
+++ b/cd_hit_protein.xml	Thu Apr 14 09:24:49 2016 -0400
@@ -1,13 +1,11 @@
-<tool id="cd_hit_protein" name="CD-HIT PROTEIN" version="1.2">
+<tool id="cd_hit_protein" name="CD-HIT PROTEIN" version="1.3">
   <description>Cluster a protein dataset into representative sequences</description>
 
   <macros>
     <import>cdhit_macros.xml</import>
   </macros>
 
-  <requirements>
-    <requirement type="package" version="4.6.1">cd-hit</requirement>
-  </requirements>
+  <expand macro="requirements"/>
 
   <command><![CDATA[
     cd-hit 
--- a/cdhit_macros.xml	Tue Apr 12 02:54:39 2016 -0400
+++ b/cdhit_macros.xml	Thu Apr 14 09:24:49 2016 -0400
@@ -1,4 +1,10 @@
 <macros>
+  <xml name="requirements">
+      <requirements>
+        <requirement type="package" version="4.6.4">cd-hit</requirement>
+      </requirements>
+    </xml>
+
   <template name="common_cdhit_options">      
     <!-- start common cdhit  options -->
 
--- a/tool_dependencies.xml	Tue Apr 12 02:54:39 2016 -0400
+++ b/tool_dependencies.xml	Thu Apr 14 09:24:49 2016 -0400
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="cd-hit" version="4.6.1">
+    <package name="cd-hit" version="4.6.4">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
+                <action type="download_by_url" md5="d4baba1e95ba9c831a763c6b8a19ce21">https://github.com/weizhongli/cdhit/releases/download/V4.6.4/cd-hit-v4.6.4-2015-0603.tar.gz</action>
                 <action type="shell_command">make</action>
                 <action type="move_file">
                      <source>cd-hit</source>