--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pplacer-wrapper.sh	Thu Feb 26 18:16:36 2015 -0500
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+source $(dirname $0)/util.sh
+source $1
+
+QUERY_SEQS=$(extify fasta ${QUERY_SEQS})
+PPLACER_DEFAULT_ARGS="-j ${GALAXY_SLOTS:-4} -p --inform-prior --prior-lower 0.01 --map-identity"
+
+pplacer \
+    ${PPLACER_DEFAULT_ARGS} \
+    -c ${REFPKG} \
+    -o ${PLACED_SEQS} \
+    ${QUERY_SEQS}