Mercurial > repos > bcclaywell > microbiome_pplacer_suite

diff filter-wrapper.sh @ 5:2d023c621bd0 draft

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author bcclaywell
date Thu, 26 Mar 2015 16:56:09 -0400
parents ce6db18f5fd3
children
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line diff
--- a/filter-wrapper.sh	Wed Mar 25 19:25:27 2015 -0400
+++ b/filter-wrapper.sh	Thu Mar 26 16:56:09 2015 -0400
@@ -30,3 +30,15 @@
 fi
 
 mv filtered.fasta ${FILTERED_SEQS}
+
+sequencing_quality_report.py ${PLATE_JSON} -t "Sequencing quality report" -o ${SQR_DIR}
+
+cat <<EOF > ${SQR}
+<!DOCTYPE HTML>
+<html lang="en-US">
+  <head/>
+  <body>
+    <a href="index.html">Sequencing quality report</a>
+  </body>
+</html>
+EOF