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comparison render_datatable.xml @ 2:ce6db18f5fd3 draft

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author bcclaywell
date Thu, 26 Feb 2015 19:31:20 -0500
parents d4690e65afcd
children 3c50a937d7c1
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1:c8cc6529038c 2:ce6db18f5fd3
1 <tool id="PHYLO_render_datatable" name="Render CSV file" version="1.1.0">
2 <description>as an interactive HTML table</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <command interpreter="bash">
7 render_datatable-wrapper.sh $config
8 </command>
9 <stdio>
10 <expand macro="basic_errors"/>
11 </stdio>
12 <inputs>
13 <param name="input" type="data" format="csv" label="CSV file"/>
14 </inputs>
15 <outputs>
16 <data format="html" name="output" label="Generated table"/>
17 </outputs>
18 <configfiles>
19 <configfile name="config">
20 INPUT="${input}"
21
22 OUTPUT="${output}"
23 OUTPUT_DIR="${output.files_path}"
24 </configfile>
25 </configfiles>
26 <!-- The contents of the help tag is parsed as reStructuredText. Please see
27 help-template.rst for examples of commonly-used sections in other Galaxy
28 tools. -->
29 <help>
30
31 .. class:: infomark
32
33 **What it does**
34
35 This tool reformats a CSV file, like this::
36
37 "seqname","accession","tax_id","species_name","is_type"
38 "FM872653","FM872653","308994","Dialister propionicifaciens",0.0
39 "AY331416","AY331416","239137","Candidate Division TM7 oral",0.0
40 "DQ666092","DQ666092","95818_1","Candidate Division TM7 vaginal",0.0
41 "S002223913","GQ900631","186802_3","bacterium BVAB3-Strain 1",0.0
42 ...
43
44 into an interactive HTML table.
45
46 [placeholder]
47
48 +-------------+-----------+----------+---------------------------------------+----------+
49 | seqname | accession | tax_id | species_name | is_type |
50 +=============+===========+==========+=======================================+==========+
51 | FM872653 | FM872653 | 308994 | Dialister propionicifaciens | 0.0 |
52 +-------------+-----------+----------+---------------------------------------+----------+
53 | AY331416 | AY331416 | 239137 | Candidate Division TM7 oral | 0.0 |
54 +-------------+-----------+----------+---------------------------------------+----------+
55 | DQ666092 | DQ666092 | 95818_1 | Candidate Division TM7 vaginal | 0.0 |
56 +-------------+-----------+----------+---------------------------------------+----------+
57 | S002223913 | GQ900631 | 186802_3 | bacterium BVAB3-Strain 1 | 0.0 |
58 +-------------+-----------+----------+---------------------------------------+----------+
59
60 ...
61
62 </help>
63 </tool>