Mercurial > repos > bcclaywell > microbiome_pplacer_suite

comparison classification-wrapper.sh @ 2:ce6db18f5fd3 draft

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author bcclaywell
date Thu, 26 Feb 2015 19:31:20 -0500
parents d4690e65afcd
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1:c8cc6529038c 2:ce6db18f5fd3
1 #!/bin/bash
2
3 source $(dirname $0)/util.sh
4 source $1
5
6 classif_table.py \
7 --specimen-map ${SPLIT_MAP} \
8 --metadata-map ${LABEL_MAP} \
9 --rank ${WANT_RANK} \
10 --tallies-wide ${TALLIES_WIDE} \
11 --by-specimen ${BY_SPECIMEN} \
12 ${CLASS_DB} \
13 ${BY_TAXON}