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1 <macros>
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2 <macro name="basic_errors">
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3 <exit_code range="1:" level="fatal"/>
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4 <regex match="error" level="fatal"/>
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5 <regex match="traceback" level="fatal"/>
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6 <regex match="warning" level="warning"/>
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7 </macro>
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6
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8 <macro name="cite_seqmagick">
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9 <citation type="bibtex">@MISC{fhcrc_seqmagick,
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10 title = {seqmagick: An imagemagick-like frontend to Biopython SeqIO},
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11 author = {McCoy, C. O. and Hodges, B. and Rosenthal, C. and Gallagher, A. and Matsen, IV, F. A.},
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12 publisher = {GitHub},
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13 url = "http://github.com/fhcrc/seqmagick",
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14 note = "version 0.5.0"
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15 }
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16 </citation>
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17 </macro>
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18 <!-- Biopython 1.63 -->
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19 <macro name="cite_biopython">
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20 <citation type="doi">10.1093/bioinformatics/btp163</citation>
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21 </macro>
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22 <macro name="cite_taxtastic">
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23 <citation type="bibtex">@MISC{fhcrc_taxtastic,
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24 title = {taxtastic: Create and maintain phylogenetic "reference packages" of biological sequences},
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25 author = {McCoy, C. O. and Hoffman, N. G. and Gallagher, A. and Hodges, B. and Ross, F. and Matsen, IV, F. A.},
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26 publisher = {GitHub},
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27 url = "http://github.com/fhcrc/taxtastic",
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28 note = "version 0.5.2"
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29 }
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30 </citation>
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31 </macro>
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32 <!-- INFERNAL 1.1 -->
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33 <macro name="cite_infernal">
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34 <citation type="doi">10.1093/bioinformatics/btt509</citation>
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35 </macro>
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36 <!-- pplacer 1.1alpha
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37 (the citation is for pplacer 1.0) -->
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38 <macro name="cite_pplacer">
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39 <citation type="doi">10.1186/1471-2105-11-538</citation>
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40 <citation type="bibtex">@MISC{fhcrc_pplacer,
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41 title = {pplacer: Phylogenetic placement and downstream analysis},
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42 author = {Gallagher, A. and McCoy, C. O. and Claywell, B. C. and Small, C. T. and Hodges, B. and Hoffman, N. G. and Matsen, IV, F. A.},
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43 publisher = {GitHub},
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44 url = "http://github.com/matsen/pplacer",
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45 note = "version v1.1.alpha16-1-gf748c91"
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46 }
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47 </citation>
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48 </macro>
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49 <!-- USEARCH 6 -->
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50 <macro name="cite_usearch">
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51 <citation type="doi">10.1093/bioinformatics/btq461</citation>
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52 </macro>
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0
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53 </macros>
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