Mercurial > repos > bcclaywell > microbiome_pplacer_suite

annotate classification-wrapper.sh @ 0:d4690e65afcd draft

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author bcclaywell
date Thu, 26 Feb 2015 18:16:36 -0500
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1 #!/bin/bash
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2
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3 source $(dirname $0)/util.sh
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4 source $1
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5
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6 classif_table.py \
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7 --specimen-map ${SPLIT_MAP} \
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8 --metadata-map ${LABEL_MAP} \
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9 --rank ${WANT_RANK} \
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10 --tallies-wide ${TALLIES_WIDE} \
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11 --by-specimen ${BY_SPECIMEN} \
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12 ${CLASS_DB} \
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13 ${BY_TAXON}