diff descriptiveStatistics.xml @ 0:12b4f093e6c4 draft default tip

planemo upload commit 2774930eebe258ecd56c8f1c5ddabf5092282ab9
author bcclaywell
date Mon, 12 Oct 2015 16:46:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/descriptiveStatistics.xml	Mon Oct 12 16:46:15 2015 -0400
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+<tool id="descriptiveStatistics" name="Descriptive Statistics" version="0.0.16">
+  <description>Taxonomic and Sample Descriptive Statistics</description>
+  <requirements>
+    <requirement type="package" version="3.1.2">R</requirement>
+    <requirement type="package" version="2014-05-02">microbiome_community</requirement>
+  </requirements>
+  <command interpreter="Rscript --vanilla">descriptiveStatistics.R
+       #if str($CommunityFile).strip() != "":
+          --CommunityFile="$CommunityFile"
+       #end if
+       #if str($Attributes).strip() != "":
+          --Attributes="$Attributes"
+       #end if
+       #if str($OutputFile).strip() != "":
+          --OutputFile="$OutputFile"
+       #end if
+
+2&gt;&amp;1</command>
+  <inputs>
+    <param optional="false" name="CommunityFile" format="rda" type="data" help="File created by the 'community' function." label="[required] Community File">
+      <validator type="empty_field" message="This field is required."/>
+    </param>
+    <param optional="true" name="Attributes" type="text" help="Comma-separated names of SamplesFile columns on which&#10;descriptive statistics are to be calculated. Example:&#10;Nugent_2_group" size="60" label="Attributes">
+      <validator type="empty_field" message="This field is required."/>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="txt" name="OutputFile" label="descriptiveStatistics.txt"/>
+  </outputs>
+  <help>
+**Description**
+
+Generate descriptive statistics about taxa and samples present in
+a CommunityFile.
+</help>
+</tool>