Mercurial > repos > bcclaywell > microbiome_community_suite
diff descriptiveStatistics.xml @ 0:12b4f093e6c4 draft default tip
planemo upload commit 2774930eebe258ecd56c8f1c5ddabf5092282ab9
| author | bcclaywell |
|---|---|
| date | Mon, 12 Oct 2015 16:46:15 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/descriptiveStatistics.xml Mon Oct 12 16:46:15 2015 -0400 @@ -0,0 +1,36 @@ +<tool id="descriptiveStatistics" name="Descriptive Statistics" version="0.0.16"> + <description>Taxonomic and Sample Descriptive Statistics</description> + <requirements> + <requirement type="package" version="3.1.2">R</requirement> + <requirement type="package" version="2014-05-02">microbiome_community</requirement> + </requirements> + <command interpreter="Rscript --vanilla">descriptiveStatistics.R + #if str($CommunityFile).strip() != "": + --CommunityFile="$CommunityFile" + #end if + #if str($Attributes).strip() != "": + --Attributes="$Attributes" + #end if + #if str($OutputFile).strip() != "": + --OutputFile="$OutputFile" + #end if + +2>&1</command> + <inputs> + <param optional="false" name="CommunityFile" format="rda" type="data" help="File created by the 'community' function." label="[required] Community File"> + <validator type="empty_field" message="This field is required."/> + </param> + <param optional="true" name="Attributes" type="text" help="Comma-separated names of SamplesFile columns on which descriptive statistics are to be calculated. Example: Nugent_2_group" size="60" label="Attributes"> + <validator type="empty_field" message="This field is required."/> + </param> + </inputs> + <outputs> + <data format="txt" name="OutputFile" label="descriptiveStatistics.txt"/> + </outputs> + <help> +**Description** + +Generate descriptive statistics about taxa and samples present in +a CommunityFile. +</help> +</tool>
