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comparison descriptiveStatistics.xml @ 0:12b4f093e6c4 draft default tip

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planemo upload commit 2774930eebe258ecd56c8f1c5ddabf5092282ab9
author bcclaywell
date Mon, 12 Oct 2015 16:46:15 -0400
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1 <tool id="descriptiveStatistics" name="Descriptive Statistics" version="0.0.16">
2 <description>Taxonomic and Sample Descriptive Statistics</description>
3 <requirements>
4 <requirement type="package" version="3.1.2">R</requirement>
5 <requirement type="package" version="2014-05-02">microbiome_community</requirement>
6 </requirements>
7 <command interpreter="Rscript --vanilla">descriptiveStatistics.R
8 #if str($CommunityFile).strip() != "":
9 --CommunityFile="$CommunityFile"
10 #end if
11 #if str($Attributes).strip() != "":
12 --Attributes="$Attributes"
13 #end if
14 #if str($OutputFile).strip() != "":
15 --OutputFile="$OutputFile"
16 #end if
17
18 2&gt;&amp;1</command>
19 <inputs>
20 <param optional="false" name="CommunityFile" format="rda" type="data" help="File created by the 'community' function." label="[required] Community File">
21 <validator type="empty_field" message="This field is required."/>
22 </param>
23 <param optional="true" name="Attributes" type="text" help="Comma-separated names of SamplesFile columns on which&#10;descriptive statistics are to be calculated. Example:&#10;Nugent_2_group" size="60" label="Attributes">
24 <validator type="empty_field" message="This field is required."/>
25 </param>
26 </inputs>
27 <outputs>
28 <data format="txt" name="OutputFile" label="descriptiveStatistics.txt"/>
29 </outputs>
30 <help>
31 **Description**
32
33 Generate descriptive statistics about taxa and samples present in
34 a CommunityFile.
35 </help>
36 </tool>